Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120874g00015 ATGAGAGAGGGTTTAAGATCTCAGACTCGATTGCGGAATGTTTGTACTGGCGGTGGTGGGGATGTAAAGAGTGTTTCTTTTGATTTGGGTGGTGAAGATTCACAGGTTGGTGGGGAGGCGTTAGGGTCTCTGGTTGAGGAGAAGGTGGATAATGTCGATGAAAGAGGTGCGAAGGAAGAATGTAATGCTGATTTGCGTGCTAGTACTAGTGGGAAAGGGGATGCTGGATCAGCTGAGGATGGGGGCAATGGGGGCGGTGAAGATGATGGTGTTGAGAAGAGGATGGTAGAGCATGAGGTAGTGGGGTTGAATGGGACAGTAACGATTGGTGGTCGAGTGTTGCGTTCCAGGACGAAGAGGCTAGAAAATGAAAAACCTTGCAGTGGAGGGAGTGGTGGTGGTGTAGTTGTTTCAGGGAGAGGCGGCGGGCGTGGTGGTTTTAGGAGGGTAACGGTCAAGAAGGAGTGTCAAGGTGATGGTGAATATTTTCCTAATGGTTGCGGGAATGCGGGGGTTGGTCCGAAGAAGAAAGGGAAGCGTGGGAGGCCTCGGAAAGTGAAGTTGGAAGAATCAAATGAGTTAGCTTTGGTGAGTTGTGGGAATGAGGAGGTTGAGCTGAAGAAGAATGTGAATGGTAGAAAGAAGAAGCGGAAGCGCGGGAGGCCACCTAAAGTGAAGGTGGAGGAACCGGATAAGCTAGTTGAGCAGTTGCCAAGGAAGAGGGGTAGACCCCCCAAGGATCATGGACAAAACCATCTTGCAATAGTGGTGCATGAGCATGATAGAAAAGTCAATGTGAGCCATCAAAAAGGTAAAAAAGGTTTAACTGAAAGGGTTGATGCGAAAGCAAATGTGATTGGTTATTTGAGCTCAAGGAGATCTTCTCAGAGAACCCTAGAAAAGAAGGGAACGAAGGTTTTGGAAACCGAGGGCAATGGGGTTTGTGAGGGAATAAGTGGAGAAATAATGGAAGAAAGAAAGAAGAAACGAGGAAAGGAAGGAAGGAAGCAAGAAAAGCAGTTAGTGAGAGAAAAGATTATGGAACAGATTTTAGCTGCGGGCTGGACAGTTGACTATAGACCTAGGAATGGAAGGGAATACATGGATGCTGTGTATGTTAGTCCAGATGGGAAGACACACTGGTCTATCACCTTGGCTTACAATAGGCTTAAAAAGCATTATGAAGCTGGTGATGGTGAAGGGAAGGTATATGGGTCAGGTTTCAAATTTACACCAATATCTGAAGAGGAATACCAAATGCTGACCAAGGTAATAACGAAGGAAAGAAAAAGTAAAAAGAAAAAGATGAAAAATGGGGTAAAGGGTAAAAAGTTGAAGAAAGGGAAAGCAGCTTCTCATGCAGGCATGGGTAAATCTGCGAAGCGGAAAAAGAAAAGGAAACGGAGAGAGGAGGATGACACGGATATGTTTCCCAATAAAGTATCAGTTCTAGGCAGGGATCATAAGCGACATAAAACACAAAGCAAGAAGCGAGGTGCTCCATTGGTTCGGAATGCTGAGGTTGATGTAGATTCAGAAGCTGATGGATATGTACCATACTGCGGAAAACGAACTGTACTTGCATGGATGATAGATTTGGGAACAATTCTTCAAGATGTTAAGGTTCATTATATGCAACTCAGAGAGAACAGTGTGCTATTGGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTAATGAAGTCATAACGATTTCAGACTTTGAAGCTCATGCAGGAATCAAATACTCAGATCCACTTAGAAATATACATATAGAGGGAGGAACTTCCCTTTTGCAATGCCTACTAGATTCATGGAATAAACAGGATGAGTCTGAACGCAAAGGTTTTCATTTTGTTGATGTTGCTGGTGAGGATCCAAATGATGACACATGTGGTGTCTGTGGAGATGGAGGAGATCTGATCTGCTGTGATGGTTGCCCATCAACGTTCCACCAAAGTTGCTTGGATATAAATAAGTTCCCATCTGGTGACTGGCACTGTGTATATTGTTGTTGCAAATTTTGTGGTTTGGTTGGTGGAAGTTCAAATCAGACGGATAACAATGATGGTTCTGCTATGTCAACCTTACTCACATGTCATTTGTGTGAAGAAAAATACCACATAGACTGTTCTGAGGAAAATGGTGCCAAGGATGATGATGCCAGAGATGCCTCCTTTTGTGGAAACACATGTCAAGAATTATCAGAGAGGCTTGAAATGCTTCTTGGGGTTAAGCATGAAATTGAAGATGGATTTTCGATGACTTTGGTTCGGAGATCAGATGTTGCCTTTGATGTTTCTCAGACAAAACCTGAGATAGTTGAATGTAATTCCAAGCTTGCTGTTGCATTATCAGTAATGAATGAGTGCTTCATGCCATACATTGATGAGAGAAGTGGGATTGATCTGATCCATAGCATTCTATATAATTGCGGGTCAAACTTCAAACGTCTGAACTACAGTGGATTTGTTACTGCAATTCTAGAGCGAGGGGATGAAATCATTGCTGCTGCAACTATCAGGATTCATGGGAATCAACTAGCAGAGATGCCATTTATTGGGACCCGGTTTTTGTATAGGCGACAAGGGATGTGCCGGCGGCTTCTAAATGCCATTGAATGTGCACTTAGCTCTTTGAATGTCGAGTTATTGGTCATACCAGCTGTCTCAGAAGTGAGAGAAACTTGGACTTCTGCTTTTGGGTTTGAGCCACTTGAATTGGCAAACAAGAAAATAATAAAGAGCATGAGTCTATTGGTATTCCCTCACGTAGATATGTTGCAGAAGAAGATATCAAAGCATAAGTTCGCCGAGGAAACTGCGATTACTACAGAAGCTTCCTATCTTCTGCTGAAAGATCATGCAGAAGGTGAGGTGGCAAATAATTGTGCACGGGCAGAATCATTAGTGTCTGATTCAATGAATGATTCGGCTGACATCCCTTCTAATGATGGCCAGATAAAGGATAAAACCATGTCTACTGAATCTGGCAGTGTTCTTCCTGAGGGTTCATTGAATAATGGGAACACTAAACTTCATGATAAATGTCCAGAAGAAATCACATGCCAAGTTGTTTGTCAAGAAAATTTGTCTGTGGAAGATAAGAATACTAGTTGTGATTGCGTGGAGCTGAACGATGATGAGAAACCAGTAGATTTAGATGGTCAATCAAACAACTTCTCTGAGGAAACAGAATGTCTTAGAAATGGTTGCCCCTCTGGTGAAGCAGTTCCTACAACCAATGACTCGGTGCGCCTTAAGTCGAAGGACATCACTGAAGATTGTCCTGATAATTGCGAAACAAACTCCAAAATGGTTAGCACCCCAATTCCAGATGAAGCTGAAAAACACCCAGCCGAAACACCTAAGCTCCAGACAGATACAGAAGATTGCCAATCCTTCCCTGTATCTTCTGATCTCTGTGAGAAGATTGTGGATTGTGCTGATGAGACTAGTAAGCCATCCTCAGCTGGTGAGGCTGATTCCCTTCCCGCCGATACCAACAGAAATCCAAACAACGAACACCTGACAAAGGGATCAGCAGGGCTACCGGAGCACGACTTGCAGGTCGATCAAAATCCACGAACCCTATGTACGCCAAACACTGCTTCGAGTGTAGCACTTAACTGTGCGTCTGTGGGTGCTAGCAGTGCTTCTTGCAGTAGTACTGAGGTGATGGTTCTGTCAAACCAAGCCAGTTAA 3711 0.4379 MREGLRSQTRLRNVCTGGGGDVKSVSFDLGGEDSQVGGEALGSLVEEKVDNVDERGAKEECNADLRASTSGKGDAGSAEDGGNGGGEDDGVEKRMVEHEVVGLNGTVTIGGRVLRSRTKRLENEKPCSGGSGGGVVVSGRGGGRGGFRRVTVKKECQGDGEYFPNGCGNAGVGPKKKGKRGRPRKVKLEESNELALVSCGNEEVELKKNVNGRKKKRKRGRPPKVKVEEPDKLVEQLPRKRGRPPKDHGQNHLAIVVHEHDRKVNVSHQKGKKGLTERVDAKANVIGYLSSRRSSQRTLEKKGTKVLETEGNGVCEGISGEIMEERKKKRGKEGRKQEKQLVREKIMEQILAAGWTVDYRPRNGREYMDAVYVSPDGKTHWSITLAYNRLKKHYEAGDGEGKVYGSGFKFTPISEEEYQMLTKVITKERKSKKKKMKNGVKGKKLKKGKAASHAGMGKSAKRKKKRKRREEDDTDMFPNKVSVLGRDHKRHKTQSKKRGAPLVRNAEVDVDSEADGYVPYCGKRTVLAWMIDLGTILQDVKVHYMQLRENSVLLDGKITGDGIHCGCCNEVITISDFEAHAGIKYSDPLRNIHIEGGTSLLQCLLDSWNKQDESERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCVYCCCKFCGLVGGSSNQTDNNDGSAMSTLLTCHLCEEKYHIDCSEENGAKDDDARDASFCGNTCQELSERLEMLLGVKHEIEDGFSMTLVRRSDVAFDVSQTKPEIVECNSKLAVALSVMNECFMPYIDERSGIDLIHSILYNCGSNFKRLNYSGFVTAILERGDEIIAAATIRIHGNQLAEMPFIGTRFLYRRQGMCRRLLNAIECALSSLNVELLVIPAVSEVRETWTSAFGFEPLELANKKIIKSMSLLVFPHVDMLQKKISKHKFAEETAITTEASYLLLKDHAEGEVANNCARAESLVSDSMNDSADIPSNDGQIKDKTMSTESGSVLPEGSLNNGNTKLHDKCPEEITCQVVCQENLSVEDKNTSCDCVELNDDEKPVDLDGQSNNFSEETECLRNGCPSGEAVPTTNDSVRLKSKDITEDCPDNCETNSKMVSTPIPDEAEKHPAETPKLQTDTEDCQSFPVSSDLCEKIVDCADETSKPSSAGEADSLPADTNRNPNNEHLTKGSAGLPEHDLQVDQNPRTLCTPNTASSVALNCASVGASSASCSSTEVMVLSNQAS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120874g00015 1236 PANTHER PHD FINGER PROTEIN 12 321 1073 IPR042163 GO:0003714|GO:0045892
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 1 37 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 209 249 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 1154 1199 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 163 192 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 1100 1134 - -
Stsc120874g00015 1236 PRINTS AT-hook-like domain signature 236 246 IPR017956 GO:0003677
Stsc120874g00015 1236 PRINTS AT-hook-like domain signature 214 225 IPR017956 GO:0003677
Stsc120874g00015 1236 PRINTS AT-hook-like domain signature 177 187 IPR017956 GO:0003677
Stsc120874g00015 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 694 IPR013083 -
Stsc120874g00015 1236 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 774 934 IPR000182 GO:0016747
Stsc120874g00015 1236 ProSiteProfiles Zinc finger PHD-type profile. 631 676 IPR019787 -
Stsc120874g00015 1236 Pfam Tify domain binding domain 556 605 IPR032308 -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 427 465 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 52 91 - -
Stsc120874g00015 1236 SUPERFAMILY FYVE/PHD zinc finger 626 679 IPR011011 -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 1113 1127 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 122 147 - -
Stsc120874g00015 1236 SMART AT_hook_2 238 250 IPR017956 GO:0003677
Stsc120874g00015 1236 SMART AT_hook_2 216 228 IPR017956 GO:0003677
Stsc120874g00015 1236 SMART AT_hook_2 177 189 IPR017956 GO:0003677
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 1158 1180 - -
Stsc120874g00015 1236 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 821 909 IPR016181 -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 427 479 - -
Stsc120874g00015 1236 CDD PHD1_AIRE 634 673 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 223 249 - -
Stsc120874g00015 1236 MobiDBLite consensus disorder prediction 977 1009 - -
Stsc120874g00015 1236 SMART PHD_3 633 674 IPR001965 -
Stsc120874g00015 1236 SMART PHD_3 675 735 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120874g00015 Stsc-Chr120874 103860 109529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120874g00015 177 953 PHD Transcription Factor Family AT5G36670 41.544 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120874g00015 - - lang:109346644 1179.47