Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120873g00031 ATGAAGCTATACACTTCATTGCTGTTTCTTGGTTTGATTTCCATGGTGTCTTTTGTGGCTTCTGATGCAGTGGCAAAAAATGAAGTTTCCGCGCTTCAAACCTTCAAAGAAGCTATCTTTGATGATCCACATCATGTTTTATCCAATTGGAATACGCTGGTTTCAGATCCTTGTGAGTGGAATGGTGTTTTTTGCAATGGACCTCGAGATCATGTCATCAAGCTAAACATATCAGGGTCAGCATTAAGAGGATTTCTTGCACCAGAATTGGGGCAAATCACCTACTTGCAAGAACTAATCTTGCACGGAAACAATCTTATTGGAACAATACCAAAAGAATTGGGCATGTTGAAATCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTATCAGGACCAATTCCTCGAGAAATTGGAAACTTGACCGAAGCAGTGAAAATAAACCTGCAGTCCAATGGGTTGACTGGCAGGCTACCCCCGGAGCTTGGAGATTTGAAATACCTTCAAGAACTTCGGTTGGATAGGAATAAGCTTCAAGGACCTGTTCCTGCTGGTGGAAGTTCTGATTCAAATATGCATGAGATGTATGCCTCAAATGTAAATTTAACTGGCTTGTGCCGTACGTCTCAATTAAAAGTTGCAGATTTTTCATATAACTTCCTTGTTGGGAGCTTACCCAAATGCTTGCGTGTTCCAAGATCAAGCTTTCAAGGGAATTGCCTACAGGTTAAAGACATAAAGCAGAGGACTTCTGCACAATGTGCTGGTGCTTCACCTGCCCAGAGCCGTCCAGTGATGAACCTAAAGCACCGAGCTGCTGAACATGTATCTAAGCATCAAAGAGCATCAAAACCTTCCTGGCTTTTGGCTCTAGAGATAGTGACGGGAGCCATGGTTGGTTCTCTCTTTCTGATTGCTATTTTCACGGCATATCAGAGGTTTAACAGCAAATCATCTATCATCATTCCTTGGAAAAAATCTTCAAGCGAGAAAGAGCATATGACAGTATATATAGAATCTGATTTGTTGAAAGACGTCACGAAGTATAGCAGGCAAGATCTTGAAGTGGCCTGCGAAGACTTCAGCAACATAATTGGTTCTTCACCAGATAGTCTGGTCTACAAGGGTACAATGAAAGGTGGACCTGAGATTGCTGTAATTTCCCTCTGCATTAAGGAGGAGCATTGGACGGGTTACCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACCTGGCAAGGTTGAATCATGAGAATACAGGAAAACTGCTAGGATATTGTAGAGAGAGTAATCCTTTTACCAGAATGCTGGTTTTTGATTATGCTTCAAATGGGACACTCTATGAGCACCTACATTGTTATGAAGAAGGGTGCCAATTGACTTGGACACGGCGTATGAAAGTTATTATAGGCATTGCTCGTGGACTCAGGTATTTGCACACCGAAATTGAGCCACCGTTCACTATCTCAGAGTTGAATTCTAATGCTGTATATCTTACAGAAGACTTTTCACCAAAGCTGGTTGATTTCGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAGGGCTCCATGTGCCTTCTTTCGAATTCCGTGGAGGCACGTCGTCTTGACACCAGAGGAAACATATACGGCTTCGCAGTACTTCTACTGGAAATAATCAGCGGACGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGACTGGGCTAGGGAATATCTTGAGATACCGGAAGTAATGTCAAGTGTGGTGGATCCAGAGTTGAAACATTACAAAGAAGAAGACTTGAAAGTAATATGTGAGGTGGTATCTCTATGCATCAATGGTGACCCCAATGGCCGTCCATCGATGCGGGAATTGTGTAGCATTCTGGAGAGCAGAATTGACACTTCAATTAGTGTGGATATCAAGGGATCATCTTTGGCTTGGGCTGAACTTGCCCTTTCATCTTAA 1977 0.4274 MKLYTSLLFLGLISMVSFVASDAVAKNEVSALQTFKEAIFDDPHHVLSNWNTLVSDPCEWNGVFCNGPRDHVIKLNISGSALRGFLAPELGQITYLQELILHGNNLIGTIPKELGMLKSLKVLDLGMNQLSGPIPREIGNLTEAVKINLQSNGLTGRLPPELGDLKYLQELRLDRNKLQGPVPAGGSSDSNMHEMYASNVNLTGLCRTSQLKVADFSYNFLVGSLPKCLRVPRSSFQGNCLQVKDIKQRTSAQCAGASPAQSRPVMNLKHRAAEHVSKHQRASKPSWLLALEIVTGAMVGSLFLIAIFTAYQRFNSKSSIIIPWKKSSSEKEHMTVYIESDLLKDVTKYSRQDLEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRESNPFTRMLVFDYASNGTLYEHLHCYEEGCQLTWTRRMKVIIGIARGLRYLHTEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSIGSQGSMCLLSNSVEARRLDTRGNIYGFAVLLLEIISGRPPYCKDKGYLVDWAREYLEIPEVMSSVVDPELKHYKEEDLKVICEVVSLCINGDPNGRPSMRELCSILESRIDTSISVDIKGSSLAWAELALSS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120873g00031 658 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Stsc120873g00031 658 SUPERFAMILY L domain-like 27 231 - -
Stsc120873g00031 658 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Stsc120873g00031 658 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Stsc120873g00031 658 ProSiteProfiles Protein kinase domain profile. 359 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120873g00031 658 Gene3D Transferase(Phosphotransferase) domain 1 441 645 - -
Stsc120873g00031 658 Pfam Protein tyrosine and serine/threonine kinase 363 631 IPR001245 GO:0004672|GO:0006468
Stsc120873g00031 658 Gene3D Phosphorylase Kinase; domain 1 321 440 - -
Stsc120873g00031 658 PANTHER PROTEIN MALE DISCOVERER 2 19 656 - -
Stsc120873g00031 658 FunFam Inactive receptor-like serine/threonine-protein kinase 333 440 - -
Stsc120873g00031 658 SUPERFAMILY Protein kinase-like (PK-like) 340 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120873g00031 Stsc-Chr120873 164056 168668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120873g00031 42 637 Receptor kinase-like Gene Family AT5G45780 27.961 7.85e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc120873g00031 PK_Tyr_Ser-Thr 2.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120873g00031 - - gmx:100781978 1057.36