Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc120873g00025 | ATGNNNNNNNNNNGGTTGATTCAAAAGAATGATGTGATTAAGATTATTCCTGGTGCAAAAGTGGCTTCAGATGGATTTGTCATATGGGGTCAGAGCCATGTGAATGAGAGCATGATCACAGGCGAGGCGCGTCCTGTGGCCAAGAGGAAGGGTGACGCTGTTATTGGAGGGACTGTGAATGAGAATGGGGTACTGCATATTAAGGCCACCAGGGTTGGTGCAGAGAGTGCTCTTTCTCAGATTGTTCGACTAGTCGAATCGGCTCAAATGGCCAAGGCTCCAGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTCTGGTCATTTTGATCTCGTTTACAACTTGGCTTGCTTGGTTTCTAGCTGGAAGATTTCATGCTTACCCAGATTCTTGGATACCATCTTCAATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGCCCATGTGCTTTAGGATTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGTGTGCTGATCAAAGGAGGACAGGCATTAGAAAGTGCTCACAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACCCTTACTATTGGAAAGCCAGTGGTGGTAAATACAAAACTATTGACAAATATGGTGCTACAAGAATTCTATGAGCTTGTTGCTGCTGCTGAGGTGAACAGTGAGCATCCACTGGCTAAGGCCATAGTTGAGTATGCCAAAAAACTGAGAGATGAAGAGAATCCTGCTTGGCCAGAAGCAAAGGATTTTGTCTCCATAACTGGACATGGAGTGAAGGCCACTGTTCGGAACAAGGAAGTAATAGTGGGAAACAAGAGCTTGATGGTTGAACACAATGTTGTAGTTCCTGCAGATGCTGAAGATATACTAGCAGAAGCTGAAGAGATGGCTCAAACTGGGATTTTAGTATCTATAGGTGGGGAACTGGTTGGAGTTTTAGCAATATCTGATCCACTGAAACCCAGCGCACAAGAAGTCATTTCCATTCTCAAGTCCATGAAAATAAAGAGCATCATGGTGACTGGGGACAACTGGGGTACTGCAAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAGCATAAAGCAGAGAGAGTTAAGGACTTGCAGGCTTCTGGATGCATAGTGGCTATGGTGGGGGATGGTATAAATGACTCACCAGCACTTGTAGCAGCAGATGTAGGAATGGCAATTGGTGCTGGCACTGACATTGCTATTGAGGCTGCTGATATTGTCTTGATGAAAAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCTAGGAAGACATTTTCGCGTATCAGACTCAATTACATTTGGGCCTTGGGATATAATCTTCTTGGAATCCCAATTGCTGCTGGAGCTCTTTTCCCTTCTACAGGATTTCGGTTGCCACCATGGATTGCCGGGGCTGCTATGGCCGCCTCTTCAGTCAGCGTTGTTTGTTGTTCTCTACTATTGAAATATTACAGAAGACCCAAGAAGCTGGACAACCTTGAGATAAGGGGCATAAGCATTGAATGA | 1599 | 0.4465 | MXXXXLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDAVIGGTVNENGVLHIKATRVGAESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFTTWLAWFLAGRFHAYPDSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLQEFYELVAAAEVNSEHPLAKAIVEYAKKLRDEENPAWPEAKDFVSITGHGVKATVRNKEVIVGNKSLMVEHNVVVPADAEDILAEAEEMAQTGILVSIGGELVGVLAISDPLKPSAQEVISILKSMKIKSIMVTGDNWGTANSIAKEVGIETVIAEAKPEHKAERVKDLQASGCIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc120873g00025 | 532 | Pfam | E1-E2 ATPase | 7 | 177 | - | - | |
| Stsc120873g00025 | 532 | Gene3D | - | 3 | 89 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | H+-transporting ATPase (proton pump) signature | 375 | 391 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc120873g00025 | 532 | PRINTS | H+-transporting ATPase (proton pump) signature | 434 | 459 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc120873g00025 | 532 | PRINTS | H+-transporting ATPase (proton pump) signature | 403 | 419 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc120873g00025 | 532 | FunFam | Copper-transporting ATPase 1, putative | 2 | 89 | - | - | |
| Stsc120873g00025 | 532 | Gene3D | - | 206 | 282 | IPR023299 | GO:0000166 | |
| Stsc120873g00025 | 532 | Gene3D | - | 283 | 334 | IPR023299 | GO:0000166 | |
| Stsc120873g00025 | 532 | FunFam | Probable copper-transporting ATPase HMA5 | 303 | 460 | - | - | |
| Stsc120873g00025 | 532 | SFLD | p-type atpase | 181 | 455 | IPR044492 | - | |
| Stsc120873g00025 | 532 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 5 | 528 | - | - | |
| Stsc120873g00025 | 532 | Gene3D | - | 166 | 460 | IPR023214 | - | |
| Stsc120873g00025 | 532 | SUPERFAMILY | Calcium ATPase, transduction domain A | 7 | 85 | IPR008250 | - | |
| Stsc120873g00025 | 532 | CDD | P-type_ATPase_Cu-like | 6 | 513 | - | - | |
| Stsc120873g00025 | 532 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 201 | 207 | IPR018303 | - | |
| Stsc120873g00025 | 532 | Pfam | haloacid dehalogenase-like hydrolase | 195 | 417 | - | - | |
| Stsc120873g00025 | 532 | NCBIfam | HAD-IC family P-type ATPase | 7 | 487 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc120873g00025 | 532 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 87 | 482 | IPR023298 | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 35 | 49 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 426 | 438 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 328 | 339 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 350 | 360 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 199 | 213 | - | - | |
| Stsc120873g00025 | 532 | PRINTS | P-type cation-transporting ATPase superfamily signature | 403 | 422 | - | - | |
| Stsc120873g00025 | 532 | NCBIfam | heavy metal translocating P-type ATPase | 6 | 512 | IPR027256 | GO:0006812|GO:0016020|GO:0019829 | |
| Stsc120873g00025 | 532 | SUPERFAMILY | HAD-like | 198 | 509 | IPR036412 | - | |
| Stsc120873g00025 | 532 | SFLD | Haloacid Dehalogenase | 181 | 455 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc120873g00025 | Stsc-Chr120873 | 124019 | 128840 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc120873g00025 | 6 | 532 | Primary Pumps ATPases | AT1G63440 | 86.174 | 0.0 | 943 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc120873g00025 | K17686 | - | qsa:O6P43_034232 | 930.243 |