Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120873g00012 ATGGATGGGCGGGGAGCCATGGGATTCAGTAGTGGGTCTTCTCCATTCTACTTGCACAGAGAGAGTGGAGGGTTCCAAGGAGCCCCTGGGATCAGAGCATTATCAAACACTACAGTTCAATCTCAGTCAAATGCTAGCGGAGGTGTTGTTTCTAATTCCACATTTTCATTAGAGCTTCAACCTCAAGCACAGGCTCAGGCTCAGGCTCAGGCTCAGGCAGGTTTTAGTCATGGCATTAGCATTGGTGCCTCATCTTCTGGGGCTCTAGTGCCTCTTTCTTCCTCAGGTGAGCCTGTGAAGAGGAAGAGAGGGAGACCCCGCAAGTATGGCCCTGAAGGACGAGGACAAGGACAAGGACCAGTTTCTTTGGGACTTTCACCAATGTCTGCTCCGGCTGGTTGGAACGCTGGTTCAACCTCTGATTCTCACAAAAGGGGTAGAGGACGCCCTCCTGGATCCGGGAGGAAACAACAGCTAGCTAATCTTGGTGAATGGATGAATAGTTCTGCAGGGCTGGCCTTTGCACCCCATGTAATCTCCATTGAAGTAGGGGAGGACATTGTAGCAAAGCTGTTGTCGATATCACAGCAGAGACCACGTGCTCTCTGCATCATGTCGGCTACTGGGATAGTTTCTCTAGTTACTCTGAGACAGCCTGCTTCTACCAATGCCAGTGTAACAATTGAGGGCCGATTCCAAATATTGTGTCTATCTGGTTCTTACTTGGTTGCTGAAGACGGCGGACCATCCAATAGAACCGGTGGCATAAGTGTTTCCCTTTCTAGCTCTGATGGCCATGTTATTGGGGGTGGTGTTGCAGTGCTCATTGCTGCAAGCCCAGTGCAGGTGGTAGTGTGCAGTTTTGTATATGGTGGCTGTGCTAAGACCAAGCCCACACAAGTTACCCTGATGAAAGAGGAGAGTTCCGAGCCTCAGCGCAATGATAAGTTAGCTTCTTTGGCTGGTGCTCCGCGTAGTCAAAACTACATCCCTTCTGCTACAGGCGTTTGGCCTGGATCAAGACCGGCAGAACTCAAGAGCGTGCACGGACACACTGGCATTGACTTGACACGAGGATGA 1080 0.5074 MDGRGAMGFSSGSSPFYLHRESGGFQGAPGIRALSNTTVQSQSNASGGVVSNSTFSLELQPQAQAQAQAQAQAGFSHGISIGASSSGALVPLSSSGEPVKRKRGRPRKYGPEGRGQGQGPVSLGLSPMSAPAGWNAGSTSDSHKRGRGRPPGSGRKQQLANLGEWMNSSAGLAFAPHVISIEVGEDIVAKLLSISQQRPRALCIMSATGIVSLVTLRQPASTNASVTIEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSSDGHVIGGGVAVLIAASPVQVVVCSFVYGGCAKTKPTQVTLMKEESSEPQRNDKLASLAGAPRSQNYIPSATGVWPGSRPAELKSVHGHTGIDLTRG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120873g00012 359 Gene3D - 176 306 - -
Stsc120873g00012 359 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Stsc120873g00012 359 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Stsc120873g00012 359 ProSiteProfiles PPC domain profile profile. 168 309 IPR005175 -
Stsc120873g00012 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 314 IPR039605 GO:0003680
Stsc120873g00012 359 MobiDBLite consensus disorder prediction 1 31 - -
Stsc120873g00012 359 MobiDBLite consensus disorder prediction 86 157 - -
Stsc120873g00012 359 CDD DUF296 176 288 IPR005175 -
Stsc120873g00012 359 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 290 - -
Stsc120873g00012 359 Pfam Plants and Prokaryotes Conserved (PCC) domain 176 289 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120873g00012 Stsc-Chr120873 68650 71296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120873g00012 1 359 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.500 3.95e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120873g00012 - - gmx:100798706 427.172