Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120873g00011 ATGGGCTGTGGCATATCGAAAGCATGCTGCTGGGGCACCCAAGATGATCATGTTCCAGAGGCACAAATTGTTCAAAATGAAGATAGAATTGAGGGCAGTGACTTACCCCAGTTTCGAGAGTACACTATTGACCAGCTTAGGAAGGCTACATCTGGGTTTGCAGTAGAAAATATAGTTTCTGAGCATGGAGAAAAGGCACCAAATGTGGTCTATAAAGGGAAACTTGAAAATCAAATGCGAATAGCTGTCAAACGGTTCAACAAATTAGCCTGGCCAGATGCACAACAATTTCTGGGGGAGGCCAGAGCTGTAGGTCAGCTAAGGAACCAAAGATTGGTAAATCTCCTTGGATGTTGCTGTGACGGTGATGAAAGGTTGCTTGTCGCAGAGTTTATGCCAAATGAGACTTTGGCAAAGCACTTGTTTCATTGGGAAACTCAGCCCATGAAATGGGCAATGCGACTGAGAGTTGCTTTTCACCTGGCCCAAGCTTTGGAGTACTGTACCAGCAGGGGACGTGCACTATACCATGACCTAAATGCTTACAGAGTTCTTTTTGATGATGAATACAATCCTAAACTTTCATGCTTTGGTCTGATGAAAAACAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCATTTACTCCTCCTGAGTATCTGAGGACAGGCAGAGTAACTCCAGAGAGTGTAACTTATAGCTTTGGGACCCTTTTATTTGACCTTCTAAGTGGAAAACATATTCCTCCAAGCCATGCTCTTGATCTGATTAGGGACAGGAATGTTACAACACTTACAGACTCTTGTTTAGAGGGACAATTTTCAACTGATGAGGGGACTGAATTAGTACGTCTAGCCTCACGATGTTTACAAGCTGAACCACGAGAGCGGCCTAATCCAAGGTCATTGGTTGCTGCTTTAATACCTCTCCAGAAAGATACCGAGGTTTCTTCTCTTGCGCTGATGGGCATACCAGATGGTGCTGCTGCCTTTCCCCTTACTCCACTTGGTGAAGCATGTCAGCGAATGGATCTGACTGCCATACATGAGGTGTTGGAGAAACTTGGGTACAAAGATGACGAGGGTGCAGCAACTGAGCTTTCCTTCCAAATGTGGACCAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAGGGCGATGCTGCTTTTCGGCAAAAGGAGTTTAGAACCGCAATTGATAGTTATACACAGTTCAATGATGTTGGAACCATGGTTTCTCCTACGGTCTATGCACGACGTAGTCTGTCTTATCTCTTTAGCAACATGACGGATGAAGCGCTTAAAGATGCATCACAGGCACAATCAATATCTCCTCTTTGGCACATAGCATCCTATCTACAAGCTGTTTGTCTCTTTGCACTGGGCAGGGAGGCGGAGGCTCGAGTGGCCCTTAAAGAGGCCACTTCTATGGAAACCAAAAGGAACACAAATTAG 1455 0.4481 MGCGISKACCWGTQDDHVPEAQIVQNEDRIEGSDLPQFREYTIDQLRKATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNKLAWPDAQQFLGEARAVGQLRNQRLVNLLGCCCDGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVAFHLAQALEYCTSRGRALYHDLNAYRVLFDDEYNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLFDLLSGKHIPPSHALDLIRDRNVTTLTDSCLEGQFSTDEGTELVRLASRCLQAEPRERPNPRSLVAALIPLQKDTEVSSLALMGIPDGAAAFPLTPLGEACQRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLNSKKKGDAAFRQKEFRTAIDSYTQFNDVGTMVSPTVYARRSLSYLFSNMTDEALKDASQAQSISPLWHIASYLQAVCLFALGREAEARVALKEATSMETKRNTN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120873g00011 484 ProSiteProfiles Protein kinase domain profile. 56 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120873g00011 484 Gene3D Transferase(Phosphotransferase) domain 1 133 324 - -
Stsc120873g00011 484 Gene3D Tetratricopeptide repeat domain 373 484 IPR011990 GO:0005515
Stsc120873g00011 484 Pfam Protein tyrosine and serine/threonine kinase 69 306 IPR001245 GO:0004672|GO:0006468
Stsc120873g00011 484 Gene3D Phosphorylase Kinase; domain 1 27 131 - -
Stsc120873g00011 484 FunFam probable serine/threonine-protein kinase At4g35230 377 484 - -
Stsc120873g00011 484 SUPERFAMILY Protein kinase-like (PK-like) 34 312 IPR011009 -
Stsc120873g00011 484 SUPERFAMILY TPR-like 383 477 IPR011990 GO:0005515
Stsc120873g00011 484 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 483 IPR045845 GO:0004672|GO:0009742
Stsc120873g00011 484 FunFam probable serine/threonine-protein kinase At5g41260 133 324 - -
Stsc120873g00011 484 FunFam probable serine/threonine-protein kinase At4g35230 28 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120873g00011 Stsc-Chr120873 56053 60384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120873g00011 41 318 Receptor kinase-like Gene Family AT3G58690 32.673 1.16e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc120873g00011 PK_Tyr_Ser-Thr 6.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120873g00011 K14500 - gmx:100797107 805.053