Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120873g00003 ATGTCTGGATGCAATAAATCTCCAAAAAGTGATAAACATTCGATCAAATATAAGCAGAATCAACATGGGGGAAGTCTTTCTCGTGTGAATCATAAGCCTTCTGTTTCCAATAGTGAGAATAAGCAGTACTACACAAGTTCTGAGCCAAAGCCGAAGCACCCTCAGATACTGAGCACCGCTCAGCTCATCTCTGCAGTGGGACAGATATGGGATTCTGCTAGTCGCCCGCTGTCAGGTTTGCTTCGTGAGAAAAATGCGAGTCGAGATGATAAAGGGTTCCCCATAAAGAATATTCCTGGTGGCATTCATGCGGAAAGGGATGGAGGGGTTTGCAGTTCAACTAACACTAATTACTTTCATGTTAATGTGGGGGCTGCGGCATATGGTTCGCAGATTGTACAGGAAAAATTGGATTTCCCGACAGTAACACAGAAGGCCTTGATTCTTCAATCTGGTAATGGAAGCGAAGAGCGTATTCATTCTTTGTTCCAGAGATTTTTGCAGGCCACTGATAACAGTTTAAATGAATATTGGAAAGAAATAGAACTTGGGAGTGAGAAAATCTCATTTCAATCACGAAATGTTTATTGGCGGATGAGTAGGAATGCACCTGAAGGACTTAAATACCATGTGAAGGCTACAGATCTTGCGAACAAGAAAAATAGTTCTCCAGTGGATGGGGACTGCATTTCAACAGATACAAGCACCTTGGCAGTGGCTAACAAGAGTGATGTTTTCAATCCGGATTTAATTTTAGATGAAGATCTACCATTATCCAGCGATACAACAATGGACACAGAAAATATTAGCACTCTGTGTTCAGATTATTTTCTTCCAGTTTTGCCTGGCACTAATGCTGATGTTGGGGCTTGCCAGATCTCGTCTGCTAGTATCTATACAGATTATCATATTAAATCTTTAGATACCTGTGATAGTGCTTCGATGCACTGCCAGCATAAGATTGACAATAATGAATTGCTGGAAATTCAAGGAAGACATTTTAAGGATATAACTGATGGTGAAGCTAAGGTTCAGAGCTTTGCGGCAACCCCTCAGAAGCCTTGTTATCCTGTTGCTAAGCAAGAGCATGCTTTTTCTGGTGCATTGGCTGGTGTATGTGTTAGCGTTTGTCTACATCCAGTTGACACGATTAAGACGGTTATTCAGTCATGCCGTGAAGAACAGAGGTCCATTGTTAACCTTTGCAAATCGATTGTTTCTGATAGAGGATTGCTCGGTCTATATCGTGGAATTACTACAAACATTGCTTGTTCTGCTCCAACTTCTGCAGTTTATACTTTCACTTATGAATCTGTTAAAGCAGCTTTGCTTCCGTATCTTTCAAAGGAGTATTATTCTTTTGCCCATTGTGTCGGTGGTGCTTCTGCAAGTATTGCCACCTCTTTTATATTCACTCCTAGTGAACGAATTAAGCAGCAGATGCAAGTTGGGTCTCATTATCGCAGCTGTTGGGATGCTTTGGTAGGAATTATCAGAAATGGTGGTTTTCCATCGCTTTATGCAGGTTGGGGAGCTGTACTGTGCCGAAATGTTCCACATTCAATTATCAAGTTTTATACATATGAAAGCTTGAAGAAAGCGATGCCATCGAAGCCATCTAGTATTCAACCTAACACATTTCAGACTTTAGTCTGTGGAGGAATAGCTGGATCCACTGCTGCTTTGTTTACCACTCCTTTTGATGTGATCAAGACAAGATTACAGACACAGCTCCCTGGCTCTATGAATCAATATGACAATGTGTTCCAAGGCCTTTACAAAATCAGCAAGAGTGAAGGTTTGAAGGGACTGTACAGGGGATTGACTCCACGGTTGATCATGTACATGTCTCAAGGATCACTATTTTTTGCGTCCTATGAATTTTTCAAGAAAGTGCTTTCTTTGGAAGCATCCCACTCCACTGGTTCACTTGTTCATTAG 1941 0.4137 MSGCNKSPKSDKHSIKYKQNQHGGSLSRVNHKPSVSNSENKQYYTSSEPKPKHPQILSTAQLISAVGQIWDSASRPLSGLLREKNASRDDKGFPIKNIPGGIHAERDGGVCSSTNTNYFHVNVGAAAYGSQIVQEKLDFPTVTQKALILQSGNGSEERIHSLFQRFLQATDNSLNEYWKEIELGSEKISFQSRNVYWRMSRNAPEGLKYHVKATDLANKKNSSPVDGDCISTDTSTLAVANKSDVFNPDLILDEDLPLSSDTTMDTENISTLCSDYFLPVLPGTNADVGACQISSASIYTDYHIKSLDTCDSASMHCQHKIDNNELLEIQGRHFKDITDGEAKVQSFAATPQKPCYPVAKQEHAFSGALAGVCVSVCLHPVDTIKTVIQSCREEQRSIVNLCKSIVSDRGLLGLYRGITTNIACSAPTSAVYTFTYESVKAALLPYLSKEYYSFAHCVGGASASIATSFIFTPSERIKQQMQVGSHYRSCWDALVGIIRNGGFPSLYAGWGAVLCRNVPHSIIKFYTYESLKKAMPSKPSSIQPNTFQTLVCGGIAGSTAALFTTPFDVIKTRLQTQLPGSMNQYDNVFQGLYKISKSEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKKVLSLEASHSTGSLVH 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120873g00003 646 MobiDBLite consensus disorder prediction 19 55 - -
Stsc120873g00003 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 544 632 IPR018108 -
Stsc120873g00003 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 358 442 IPR018108 -
Stsc120873g00003 646 MobiDBLite consensus disorder prediction 1 55 - -
Stsc120873g00003 646 SUPERFAMILY Mitochondrial carrier 362 629 IPR023395 -
Stsc120873g00003 646 ProSiteProfiles Solute carrier (Solcar) repeat profile. 451 534 IPR018108 -
Stsc120873g00003 646 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 329 637 - -
Stsc120873g00003 646 FunFam Mitochondrial substrate carrier protein-like 484 646 - -
Stsc120873g00003 646 Pfam Mitochondrial carrier protein 545 634 IPR018108 -
Stsc120873g00003 646 Pfam Mitochondrial carrier protein 452 536 IPR018108 -
Stsc120873g00003 646 Pfam Mitochondrial carrier protein 362 443 IPR018108 -
Stsc120873g00003 646 Gene3D Mitochondrial carrier domain 451 646 IPR023395 -
Stsc120873g00003 646 Gene3D Mitochondrial carrier domain 345 450 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120873g00003 Stsc-Chr120873 8423 11816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120873g00003 458 646 Chloroplast and Mitochondria Gene Families AT1G07030 26.000 7.92e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120873g00003 - - gmx:100812271 805.823