Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120871g00014 ATGTCTATAAACCACTACTCTTCTTCTACTTCCCCTATGGACCTTCAAGAAACGACACCGTTATGGTGGACTCAACAACACCAACACATGCTAATGGAGCCAATTCCAAATCACCACCACTACCACCACCATAATCATCACAATTCCCAAAACACCCCTCGCTTCTTCAACCTCAACAGCCAAGAAGCCGAACAAACCACGACGTCGCAAGAAGACGACGAAGAAGAGGAGCCACCGCCACCACCACCACGGCCACCGCCATCACAAGAAGACATCCAGGGAGGAGAAGACGGAGACGAGGACGAAGACGAAGGAGAGGGAGAACAACAAAAGGAGAGAATGTTCGAGAAGCCGTTAACGCCGAGTGACGTTGGAAAGCTTAACCGTCTCGTGATCCCAAAGCAGCACGCCGAAAAGTACTTCCCTCTAACTAATTCAGTTACAACAACAACTACTGAGTCAGGGACCGAGTGCAAGGGTTTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTACTCGTATTGGAACAGCAGTCAAAGCTACGTGTTAACGAAAGGTTGGAGCCGTTACGTCAAAGACAAGCGACTCGACGCCGGCGACGTCGTTTCGTTCGAGCGCCACCGTGCGGACTCTCAGAGACTGTTTATTCGGTGGAGGCGCCGATCTTCTCCGCCGGTGTTGGCGCAAGTTAGTAGGGCTGGTGGCGGTGATGGCGGTGGTCATGTTAGTGTGAATAGTGACAAGAGTGGTGTAGGGTGGACTGGCGGATTCTATTGTGCGCACCCTTCTTATCCTGCGCATCATCTTCATAATCAGCACTTAGCATATCCACAACATGAGAGTAGCAGCAGTAGTCTTCATGCAGGGTCCCAAGGGAAGAACCAAAAGATGAGAGGAATCGGGAACTGTTCAAGTTCAAGTTCGAAGGTACTTAGGTTGTTTGGGGTGAACATGGAATGCCAACCTCAACATGATGATGATTCTCAACCTTCAACAACAACAACAAATTCAGATAATAATACCCAAAATCAATTTTACTACCATAATTACTATCATCAACCTTCTAGTAATAATTCTCACCCTAATCACAATCACATGCTACCTCATCAACAATCATATTACTATTAA 1143 0.4768 MSINHYSSSTSPMDLQETTPLWWTQQHQHMLMEPIPNHHHYHHHNHHNSQNTPRFFNLNSQEAEQTTTSQEDDEEEEPPPPPPRPPPSQEDIQGGEDGDEDEDEGEGEQQKERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLTNSVTTTTTESGTECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADSQRLFIRWRRRSSPPVLAQVSRAGGGDGGGHVSVNSDKSGVGWTGGFYCAHPSYPAHHLHNQHLAYPQHESSSSSLHAGSQGKNQKMRGIGNCSSSSSKVLRLFGVNMECQPQHDDDSQPSTTTTNSDNNTQNQFYYHNYYHQPSSNNSHPNHNHMLPHQQSYYY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120871g00014 380 FunFam B3 domain-containing protein 108 236 - -
Stsc120871g00014 380 MobiDBLite consensus disorder prediction 62 121 - -
Stsc120871g00014 380 MobiDBLite consensus disorder prediction 93 107 - -
Stsc120871g00014 380 Gene3D - 103 231 IPR015300 -
Stsc120871g00014 380 MobiDBLite consensus disorder prediction 327 380 - -
Stsc120871g00014 380 Pfam B3 DNA binding domain 115 227 IPR003340 GO:0003677
Stsc120871g00014 380 CDD B3_DNA 113 217 IPR003340 GO:0003677
Stsc120871g00014 380 MobiDBLite consensus disorder prediction 281 307 - -
Stsc120871g00014 380 SUPERFAMILY DNA-binding pseudobarrel domain 110 228 IPR015300 -
Stsc120871g00014 380 ProSiteProfiles B3 DNA-binding domain profile. 115 227 IPR003340 GO:0003677
Stsc120871g00014 380 SMART B3_2 115 227 IPR003340 GO:0003677
Stsc120871g00014 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 338 IPR044800 GO:0003700
Stsc120871g00014 380 MobiDBLite consensus disorder prediction 325 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120871g00014 Stsc-Chr120871 69294 72550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120871g00014 111 342 RAV Transcription Factor Family AT5G06250 51.883 2.45e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc120871g00014 B3 9.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120871g00014 K09287 - gmx:100818164 316.235