Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120870g00016 ATGCTTAAAACTCTTGGTACACTAGATGTTTCTCAGAATCATCTGTCTAAAAAGATTCCTGAAACAATTGGAGAATGTGCCAGTTTAGAGTACCTTTATTTGCAGGGTAATTCCTTTGATGGAATCATACCACTTTCTCTGGCTAATCTGAAAGGTCTTCAACAGTTAGACCTGTCGCGAAATCAGTTGTCCGGAACAATTCCACAAGAACTGCAGAACATTTCTGTTTTGGTGTACTTCAATGCTTCTTTTAACATGTTGGAGGGTGAGGTACCAATGAATGGCGTGTTCCGAAATGCAAGGGAAGTTTCATTGAGTGGCAATGGCAAGCTTTGTGGAGGGGTCTCAAACTTAAGGCTTCCACCATGTCCCTCAAAGGCTACAAAAAAGACAAGACATCATGGATTCAAGACATGGATGATAGTTGTTACAATATGTTCAGCTGTGTTTCTTATTCTTCTTTCATCCATTCTTGCATTCTTGTTTAGAAGAAGAAGACGGGGAAAAGCATCTATTGATTCAACAAATGAGAAGCTGCCCAGAGTATCATATCAGAACCTATACAATGCAACAAATGGATTCTCAACTGGGAACTTAATAGGGTCTGGTGGTTATGGCTCTGTGTATAAAGGACTACTTGATTCTTCAGAAAATATTGTTGCTGTAAAGGTTCTTAACCTTCAAGTGAAAGGAGCTCACAAAAGTTTCATGGCTGAATGCAATGCTTTAAGAAATATCAGGCACAGAAATCTAGCAAAGATCATAACAAGTTGCTCTAGTGTGGATTACAAGGGAAATGATTTTAAGGCTCTTGTTTATGAGTACATGTCAAGTGGAAGCTTAGACAAATGGCTGCATCCCGACGGAGAATGTTCGAACCGGCTAAGAACACTAAACCTGTGGCAAAGATTAGAAGCTATTATGGATGTTGCTTCTGCATTGCATTATCTTCACTATGAATGTGAGCAGCCTGTTATTCATTGTGATTTGAAGCCAAGCAATGTCCTTCTTGGTGACAACATGGCTGCTCATGTGAGTGATTTCGGTTTAGCAAGACTTATCTCAGCAATTGATGGCAACTCTCAGAACCAAACCAGCACCAGTGGAATCAAAGGAACTATTGGTTATGCTCCTCCAGAATATGGAACAAGCTCTCAAGTGTCCATAGAAGGTGACTCATATAGCTTTGGCATTCTTGTTTTGGAGATGCTAACTGGGAAGAGACCAACTGATGAAATGTTTAAAGATGGGTGTAGCCTCCACGACTATGTCCATGATGCACTTCCAAATAATATCTTGAAAATTGTTGATGCAACTCTGCTCTCAAAGATGGATGAAGAAATTCCAACAATAACAATTGCAGAAGAAGAAGATAATCATATTGAGAATGCAGGGCACTTGCAGAGTAATGCTGAGAACTGGTTGTTCTCATTGTTCAAGATTGGTCTTGCTTGTTCAGTGGACCCACCAAGAGAAAGGATGAATATGATGCAAGTCAACAGAGAACTCAACATTATCAAGAAAGCTTTCCAAGCTTGA 1539 0.3983 MLKTLGTLDVSQNHLSKKIPETIGECASLEYLYLQGNSFDGIIPLSLANLKGLQQLDLSRNQLSGTIPQELQNISVLVYFNASFNMLEGEVPMNGVFRNAREVSLSGNGKLCGGVSNLRLPPCPSKATKKTRHHGFKTWMIVVTICSAVFLILLSSILAFLFRRRRRGKASIDSTNEKLPRVSYQNLYNATNGFSTGNLIGSGGYGSVYKGLLDSSENIVAVKVLNLQVKGAHKSFMAECNALRNIRHRNLAKIITSCSSVDYKGNDFKALVYEYMSSGSLDKWLHPDGECSNRLRTLNLWQRLEAIMDVASALHYLHYECEQPVIHCDLKPSNVLLGDNMAAHVSDFGLARLISAIDGNSQNQTSTSGIKGTIGYAPPEYGTSSQVSIEGDSYSFGILVLEMLTGKRPTDEMFKDGCSLHDYVHDALPNNILKIVDATLLSKMDEEIPTITIAEEEDNHIENAGHLQSNAENWLFSLFKIGLACSVDPPRERMNMMQVNRELNIIKKAFQA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120870g00016 512 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Stsc120870g00016 512 FunFam LRR receptor-like serine/threonine-protein kinase EFR 165 275 - -
Stsc120870g00016 512 SMART serkin_6 194 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120870g00016 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Stsc120870g00016 512 Gene3D Transferase(Phosphotransferase) domain 1 276 512 - -
Stsc120870g00016 512 Pfam Protein kinase domain 196 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120870g00016 512 SUPERFAMILY L domain-like 2 112 - -
Stsc120870g00016 512 Gene3D Phosphorylase Kinase; domain 1 173 275 - -
Stsc120870g00016 512 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
Stsc120870g00016 512 PANTHER OS04G0122200 PROTEIN 2 494 - -
Stsc120870g00016 512 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 276 512 - -
Stsc120870g00016 512 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 120 - -
Stsc120870g00016 512 Pfam Leucine rich repeat 28 87 IPR001611 GO:0005515
Stsc120870g00016 512 ProSiteProfiles Protein kinase domain profile. 194 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120870g00016 512 SUPERFAMILY Protein kinase-like (PK-like) 172 503 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120870g00016 Stsc-Chr120870 174006 175858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120870g00016 2 93 Receptor kinase-like Gene Family AT3G47570 36.957 8.73e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc120870g00016 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120870g00016 - - gmx:100797146 657.907