Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120870g00011 ATGAAGACTGAAACTATTCCTGGAAACAGGAAATCGCGCAAGAGACGCAGTGGAGGAAGCGATTCGGTAGAGAACACTCTAGAGAAGTGGAAGGAGTACAACAGGCAGCAGCAACAACTAATCAGTGGAGGAAATGGGGTTGAAGGGGTTCATAAGGTTCCTGCAAAGGGATCAAGAAAAGGGTGCATGAGAGGCAAAGGTGGACCTCAGAATCCTGATTGCAAGTTCAGGGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCCGAGATCCGTGAACCTATCAATGGCAAGCTTGTTGGTGAGAAACCGAACAGGCTTTGGCTTGGAACCTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCAAGGGCCATGTATGGCCCTTGCGCGCGTTTGAACTTCCCTCACCATCATAGCATAGAGTCGGTAGGCTCCAATGGATCATCGTCTAGTGCAGGATCTGATCAGAAATCACCAAGCGGAACCTCTGTAGATACTCTGGATGGTGGTGATCTTACAAAAGCTGGTGGGTTGGAGGGGAATCGTGACATGAGTCATGAAGAAAAACCCAAGTTTTCTGAGGAAAATAAATTAATGGAAATGGATAAGGAATGTGAGGGAAGAATTCTTCAAGGATCTTTCAAGTATGTTAAGGTTGAAGATCCTGGAGAAAGTGAAGGACTAGAGAGAGAGTTAGAGGAGGTTTTGAAGAATTCTGGCATAGTTGGAGAATGTAATAATCACATTCAAGAGGATCCTCTGTGCATGGCTATGAATACAGGAGCTGATTATAGCTCTTGTGATGCTACTCCACAGGGGATTATGGTGAAGAGTGAAGTGGAAAATTCCAAATCCTTTGATGAGTTAGGATGCATCAACCATTGCTTCGGGTACTTGCATAATATGATTCCAAACAACAATCCGAGGTCAGTGTATGAGGGTTTTAACAACCTCAAATCTGAGGCAACTATTGCGACAGAAGATATGGAGGAAGTAATTGCCGAAATTCTGCAGCTTTGCAGAAGCAAGTGCTCCAAGATGAGCAATGTTCAGACACAAAATGGGCAACTCAGATATAATGTATATGATGATAGTGACTGCAAGAATGAAGCAGCCACCATAACAGGGAGTTCTAATCATTCTATGCAGGGAAGTAATCATCTAGTTACTGATGGTACTTTTGGATCAATTGGTTATGTGTCAGAAAATGAGATGTATAAGATTAATAACACTAGTAGAGACCCTAAATTGCAAGAGAAAAGAAATGCAGGGTCTGGATTTAGCTCTGGGTTGAGTAGGAGGTGTTCTGATATGTCGCAACAGTTACAGAAACTGGGCGGTTACTTGCCTGAAAATTTGAATAATCTGCAGTTTGCAGACATGGAAGTAGGTCATGATTATAGTTTCTTGAGTCCAGACTATGATTTTGGTCTATTGGAAGAGAAGAAGTTACTTGATGTGTGCTTTTCACAAAGAGGGTCTAGTTCCTGA 1503 0.4318 MKTETIPGNRKSRKRRSGGSDSVENTLEKWKEYNRQQQQLISGGNGVEGVHKVPAKGSRKGCMRGKGGPQNPDCKFRGVRQRIWGKWVAEIREPINGKLVGEKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPHHHSIESVGSNGSSSSAGSDQKSPSGTSVDTLDGGDLTKAGGLEGNRDMSHEEKPKFSEENKLMEMDKECEGRILQGSFKYVKVEDPGESEGLERELEEVLKNSGIVGECNNHIQEDPLCMAMNTGADYSSCDATPQGIMVKSEVENSKSFDELGCINHCFGYLHNMIPNNNPRSVYEGFNNLKSEATIATEDMEEVIAEILQLCRSKCSKMSNVQTQNGQLRYNVYDDSDCKNEAATITGSSNHSMQGSNHLVTDGTFGSIGYVSENEMYKINNTSRDPKLQEKRNAGSGFSSGLSRRCSDMSQQLQKLGGYLPENLNNLQFADMEVGHDYSFLSPDYDFGLLEEKKLLDVCFSQRGSSS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120870g00011 500 MobiDBLite consensus disorder prediction 415 436 - -
Stsc120870g00011 500 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 269 - -
Stsc120870g00011 500 Coils Coil 319 339 - -
Stsc120870g00011 500 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Stsc120870g00011 500 MobiDBLite consensus disorder prediction 145 171 - -
Stsc120870g00011 500 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Stsc120870g00011 500 MobiDBLite consensus disorder prediction 184 202 - -
Stsc120870g00011 500 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Stsc120870g00011 500 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Stsc120870g00011 500 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Stsc120870g00011 500 CDD AP2 74 141 IPR001471 GO:0003700|GO:0006355
Stsc120870g00011 500 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Stsc120870g00011 500 MobiDBLite consensus disorder prediction 145 202 - -
Stsc120870g00011 500 MobiDBLite consensus disorder prediction 1 25 - -
Stsc120870g00011 500 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Stsc120870g00011 500 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120870g00011 Stsc-Chr120870 136248 137992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120870g00011 13 168 AP2-EREBP Transcription Factor Family AT2G40340 53.797 2.57e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120870g00011 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120870g00011 - - aip:107636903 525.013