Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120868g00031 ATGATGGCTCGAGCAGTGTGCGATGAGAAATCGAGGGAGATGGTGTCATCATCAAGTGGCTTCTGCTACTCGGGGACCACGATGGAGGGGTTCGTGGCGGACCCTGCAGACATGTTCAACCTCACCACTGCCATCGACATGGTAGGGTTCTCCACCAAGAATCTTGAGCAGCAGCACAGTGATAACAACAACAACCCTCACATGTGGAAGGCTTTCTTTGGGAAACAAGGACTACCTTCCCCTTCTAATAAGAACATGAACGAGTCCTCTTCAACCTCCTTCTACCAACACGGCACCAGCAGCAACAACAATAACAATCTAATGGTTGGGGGTGATGATGATGACTCATCTTCGTGGCAGGAGAACAACAGGTTGGTGGTTGATGATTCGTCTCTGAGGTGTGTGTTCCCTTGTGAAGGAAACGAGAGGCCAAGTCAAGGTCTCTCACTCTCTCTCAGTTCAACCAATCCTTCATCCATTGGATTGCAATCTTTTGAGCTAAGACAAACCACTCATCATCACCCTTATTATGCATATCAAAATTGTGCTAATAATAAAGCTGCAGCTTCCTCATCGTCATCGACTAGTATGCTCAAGAACTCCAAGTACTTGGTGGCAGCACAGGAGCTTCTCAACGAGTTTTGTAGCCTAGCCATAAAGCACAGTAGTGACGCCCCAAAGCACAACAAGTCCAGCAACAACCTCAACTGGGAAGATCAAGATAACGGTACCACCACTCCCTCAAAGAAGCCATCTCTTACCTCTCTTGAATTTGTGGAGCTGCAAAAGCGTAAGACCAAACTGCTTTCCATGCTGGAAGAGGTTGACAGGAGATACAAGAACTACCGGATTCAGATGAAAGGGGTGGTGTGTTCGTTTGAAGAGGTGGCTGGGAACGGTGCGGCCACTGTATACACGGCTTTGGCACAGAAGGCCATGTCTAGATATTTCAGGAACTTGAAGGATGCCATAATGGGGCAGGTTCAGGCCACAAGGAAGGCCATGGGAGAGAAAGATCTAGTTGCACCAGGCACAACCAAGGGTGAAACCCCAAGGCTCAAGATCATTGATCAAGCTTTGAGGCAGCAAAGGGCATTCCAGCAAATGAGCATGATGGAAACTCATCCATGGAGACCTCAGCGTGGCCTTCCCGAGCGCTCCGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTTCTCCATCCTTACCCAAGCGACGTTGATAAACATATTCTAGCCCGCCAAACTGGCCTATCAAGAAGCCAGGTGTCCAACTGGTTTATCAACGCAAGAGTTCGTCTGTGGAAGCCAATGGTGGAGGAAATGTACACGGAGGAATTGAAGGAACAAGAAAACATGATGGCTTCATCGGAGGGTGCTGCCACTGCTGACCCGGACCTGGAAGATAATAATAACAATAGTCATCATCATCATCATAACCTGCCATCATCACGATCGGAGGATCAGAAGCCAACAGTAGTAGTGGTAGGTATGGAGTCCGATCATTGTGCATCATCATCCATGCTGGACCCAAAGAGCAGCCATAATAATCCGGAAGAAGAATGCTTGGGGCGAGTGATGGACACATTTGGGTCTGTGGAGCTTGATTTCTCTTCCTACACCCAGCAGCAGCATCAGCAGCAGGGTTTCAATGGTGGAGGGGTTTCTTTGACTCTAGGGTTACAGCAGCACGGTGGAAGCGGGGTGAGCCTGGCGTTCCCTCCTCCTCCTGCTGCTCCTCACAGTCATGAGAGTTCCGTGTTCTACACAACAAGCAGGAATGATGAGATTATTGACAACTGTCCAGCGTCATCATCAGTAGTTCATCATCAGTACTCTCTTGTTGATGGCGAACCGCAGAATCTTCCCTACAGGAATCTCATGGCTGCACACTTGCTTCATGACCTCGCTGGCTAA 1917 0.4888 MMARAVCDEKSREMVSSSSGFCYSGTTMEGFVADPADMFNLTTAIDMVGFSTKNLEQQHSDNNNNPHMWKAFFGKQGLPSPSNKNMNESSSTSFYQHGTSSNNNNNLMVGGDDDDSSSWQENNRLVVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTTHHHPYYAYQNCANNKAAASSSSSTSMLKNSKYLVAAQELLNEFCSLAIKHSSDAPKHNKSSNNLNWEDQDNGTTTPSKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKNYRIQMKGVVCSFEEVAGNGAATVYTALAQKAMSRYFRNLKDAIMGQVQATRKAMGEKDLVAPGTTKGETPRLKIIDQALRQQRAFQQMSMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYTEELKEQENMMASSEGAATADPDLEDNNNNSHHHHHNLPSSRSEDQKPTVVVVGMESDHCASSSMLDPKSSHNNPEEECLGRVMDTFGSVELDFSSYTQQQHQQQGFNGGGVSLTLGLQQHGGSGVSLAFPPPPAAPHSHESSVFYTTSRNDEIIDNCPASSSVVHHQYSLVDGEPQNLPYRNLMAAHLLHDLAG 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120868g00031 638 Pfam Associated with HOX 197 325 IPR006563 -
Stsc120868g00031 638 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 228 251 - -
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 56 120 - -
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 469 485 - -
Stsc120868g00031 638 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Stsc120868g00031 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 466 - -
Stsc120868g00031 638 Gene3D - 380 442 - -
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 223 251 - -
Stsc120868g00031 638 CDD homeodomain 377 438 IPR001356 GO:0003677
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 448 490 - -
Stsc120868g00031 638 MobiDBLite consensus disorder prediction 78 120 - -
Stsc120868g00031 638 FunFam BEL1-like homeodomain protein 4 380 442 - -
Stsc120868g00031 638 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Stsc120868g00031 638 SMART prehox3 192 326 IPR006563 -
Stsc120868g00031 638 SMART HOX_1 377 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120868g00031 Stsc-Chr120868 168673 172723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120868g00031 116 637 Homeobox Transcription Factor Family AT5G41410 45.222 2.17e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc120868g00031 POX 1.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120868g00031 - - lang:109331282 677.167