Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120868g00008 ATGGAACAGAAAAGCCTGTTGATATCAGCGCTGAGCGTTGGGGTTGGAGTGGGAGTTGGGATTGGCTTGGCTTCTGGACAAAGCCTTGGTAGCACATGGGCTTCAACTGCTTCTTCTTCTTCAAACTCAAACGCCATCACTCCCATCAAGTTGGAGCAGGAAATGCTTAAACTCGTGCTTGATGGCAGAGACAGCAACGTTACTTTTGATCACTTCCCTTATTATCTCAGTGAGCAGACGAGGGTTTTGCTGACAAGTGCCGCTTATGTTCATTTAAAGCATCCCGATATTTCTAAGTATATGCGTAATCTTGCTCCTGCAAGCCGAACTATTCTGCTTTCAGGGCCAGCAGAATCTTACCTGCAGGTGCATGCCAAGGCTTTGGCTCACTACTCTGAGGCCAAGTTGCTTCTCTTGGATTTAACTGACTTTTCATTGAAGATTCAGAGTAGATATGGTTCTTCTGCAGACAAGGAATCTACTTCCTTCAAAAGATCTACTTCAGAATCCACTCTGGAGCGGTTATCTGACATGTTTGGATCATTTTCAATCTTTTCACAGAGGGAGGAGCCTAAGGTTGCAGGCAAAATACAGAGGCAAAGCAGTGGAGTGGACCTCCGATCGATGCGGGCAGAAGGATCTTGTAATCCTCCTAAGCTTCGTAGAAATGTGTCTGCCTCTGCAAATATTAGTAGCCTTGCCTTGCAAAGCAATCCTACAAATCCAGCTCCTCTGAAGCGCACAACCAGCTGGTCCTTTGATGAGAAGCTTCTTATACAGACTCTTTACAAGTTGCTGCATTTTGTGTCAAAAACCAATCCCATTGTGCTATATCTGCGGGATGTTGACAAGTTGCTACATAGATCAACAAGGATTTTTAACCTGTTCCAGAAAATGTTGAGTAAATTATCCGGACCAATTCTAATTCTTGGTTCACGAGTTTTGGATGCTGATAATGCCTACCAAGAGGTAGATGACAGGCTCAGTTTGCTGTTCCCTTACAATCTAGTAATCAGACCCCCAGACAATGAATCGCATCTCATCAGCTGGAAGACTCGATTTGAAGAGGATATGAAGCTGATACAGGTTCAGGATAACAAGAACCATATCAGGGAAGTACTTGCAGCCAATGATCTTGATTGTGATGACCTGGACTCTGTCTGTGTTGCGGACACAATGGTTCTCAGCAACTACATAGAAGAGATTGTTGTGTCTGCATTTTCATATCATTTAATGAATAACAAAGATCCTGAATACAGAAATGGAAAACTTGTTATTCCCTGCAATAGTTTGTCCCATGCATTGAGTATATTCCAGGAGGGGAAATTCAGTGAAAAAGATACTTTAAAATTAGAAGCTCATGCAGTAAAATCTGAGAAAAAGGAAGAACCTGCTAAGAAACGAGAAGAAAAGTCTGAAAGTCCTGCTCCTGTTAAGAAGGCTGAAGCAGAAATATCAACTTCATTGGTAAAGGCTGAGGGTGAAAACTCAGCTCCAACTCCCAAAGTTGAAGTTCCTCCCGATAATGAATTCGAGAAGCGAATAAGACCTGCGGTAATACCAGCAAATGAAATTGGTGTGACATTCTCGGACATTGGTGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGATCTCTTCACAGGAGGCCTTCTAAAGCCCTGTAGAGGAATATTGCTGTTTGGTCCTCCTGGCACCGGAAAGACAATGCTGGCAAAGGCCATCGCGAACGAGGCCGGGGCAAGTTTCATAAATGTGTCCATGTCTACCATCACTTCCAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACACTGGCAGCTAAGGTCTCCCCAACAATCATATTCGTTGATGAGGTTGACAGCATGCTTGGGCAACGGACCAGAGTTGGGGAGCATGAAGCCATGAGGAAAATCAAGAATGAGTTTATGACTCACTGGGATGGACTAATGACAAAACCAGGGGAACGCATCCTTGTTCTTGCTGCAACCAATAGGCCCTTTGACTTGGATGAAGCAATTATTAGGAGATTTGAAAGAAGGTACCACTGCTAG 2091 0.4385 MEQKSLLISALSVGVGVGVGIGLASGQSLGSTWASTASSSSNSNAITPIKLEQEMLKLVLDGRDSNVTFDHFPYYLSEQTRVLLTSAAYVHLKHPDISKYMRNLAPASRTILLSGPAESYLQVHAKALAHYSEAKLLLLDLTDFSLKIQSRYGSSADKESTSFKRSTSESTLERLSDMFGSFSIFSQREEPKVAGKIQRQSSGVDLRSMRAEGSCNPPKLRRNVSASANISSLALQSNPTNPAPLKRTTSWSFDEKLLIQTLYKLLHFVSKTNPIVLYLRDVDKLLHRSTRIFNLFQKMLSKLSGPILILGSRVLDADNAYQEVDDRLSLLFPYNLVIRPPDNESHLISWKTRFEEDMKLIQVQDNKNHIREVLAANDLDCDDLDSVCVADTMVLSNYIEEIVVSAFSYHLMNNKDPEYRNGKLVIPCNSLSHALSIFQEGKFSEKDTLKLEAHAVKSEKKEEPAKKREEKSESPAPVKKAEAEISTSLVKAEGENSAPTPKVEVPPDNEFEKRIRPAVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRYHC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120868g00008 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 692 IPR027417 -
Stsc120868g00008 696 SMART AAA_5 563 695 IPR003593 GO:0016887
Stsc120868g00008 696 Pfam ATPase family associated with various cellular activities (AAA) 567 694 IPR003959 GO:0005524|GO:0016887
Stsc120868g00008 696 MobiDBLite consensus disorder prediction 489 508 - -
Stsc120868g00008 696 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 526 696 - -
Stsc120868g00008 696 ProSitePatterns AAA-protein family signature. 670 689 IPR003960 GO:0005524|GO:0016887
Stsc120868g00008 696 MobiDBLite consensus disorder prediction 455 478 - -
Stsc120868g00008 696 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 51 695 - -
Stsc120868g00008 696 MobiDBLite consensus disorder prediction 455 483 - -
Stsc120868g00008 696 Gene3D - 526 695 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120868g00008 Stsc-Chr120868 38250 41513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120868g00008 527 692 Calmodulin-binding Proteins AT3G56690 39.645 3.42e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120868g00008 - - aip:107643102 1199.11