Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120868g00007 ATGGGCGGCAGCTGCAGCTCCACCGCCGCCACAAGCGCACCCTCCTCCCAAGCTCACAACAACAGGGCCGACGCCCATCGCCCCTCCAATGGCATCAACATTCTCCATCCCCATTCCAACCCCACTCCCCACAAACCCCCGCCACCTTCCTCCTCGTCCGCCCCCATCGGCCGGGTGTTGGGCCGCCCCATGGAGGACGTGCGGTCCACCTACGTCTTCGGTCGGGAGCTGGGGCGGGGTCAATTCGGCGTGACTTACCTCGTGACCCACAAGACCACGCGCGAGCAGTTCGCGTGCAAGTCAATCGCCACGCGGAAGCTGGTCAACCGCGATGACATCGAGGACATCCGCCGTGAGGTGCAGATCATGCACCACCTCACCGGTCACCGCAACATCGTCGAGCTCAAGGCGGCCTACGAGGACCGCCACTCCGTCAACCNNNNNNNNNNACTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCATCGCCAAGGGGCATTACTCGGAGCGCGCCGCCGCGAACCTCTGCCGCCAGATCGTGACGGTGGTCCATAACTGCCACTCCATGGGTGTGATGCACAGAGACCTGAAGCCCGAGAATTTCTTGTTACTCAGTAAGGATGAGAATTCCCCTCTCAAAGCCACTGACTTTGGTCTCTCCGTCTTCTTCAAGCCAGGAGATGTGTTTAAAGACCTTGTTGGGAGTGCATACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAGGCTGACATTTGGAGTGCCGGCGTTATCTTGTACATTCTGCTCTCCGGTGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATATTTGATGCTATTCTTCGTGGACACATTGATTTTGGATCGGATCCTTGGCCTTCCATATCTAGCAGCGCCAAAGATCTGGTCAAGAAGATGCTACGTGCTGATGCCAAGGAACGACTTTCGGCAACTGATGTCCTTAACCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTTGACATTGCTGTTTTGAGCAGAATGAAACAATTCAGGGCAATGAACAAGTTAAAGAAAGTTGCGTTGAAGGTAATTGCTGAGAGTCTTTCTGAAGAAGAAATCATTGGCTTGAAAGAGATGTTCAAAAGTATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTTGGTACCAAGCTTTCTGAATCTGAAGTAAGGCAGTTGATGGAAGCGGCCGATGTAGATGGAAATGGAACTATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAAGATCACCTATATAAGGCCTTTGAATATTTTGACAAGGATAAAAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTCAAGAAGTATAATATGGGTGATGAGAAAACCATAAAGGAAATCATTGCCGAAGTTGACACGGACCATGACGGAAGAATTAACTATGATGAGTTTGCAGCCATGATGAGGAAAGGCAACCCAGACTTGAATGCGAACAGACGTCGCAAATAA 1566 0.5083 MGGSCSSTAATSAPSSQAHNNRADAHRPSNGINILHPHSNPTPHKPPPPSSSSAPIGRVLGRPMEDVRSTYVFGRELGRGQFGVTYLVTHKTTREQFACKSIATRKLVNRDDIEDIRREVQIMHHLTGHRNIVELKAAYEDRHSVNXXXXLCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHSMGVMHRDLKPENFLLLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFGSDPWPSISSSAKDLVKKMLRADAKERLSATDVLNHPWMREDGASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAESLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDHDGRINYDEFAAMMRKGNPDLNANRRRK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120868g00007 521 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Stsc120868g00007 521 FunFam Calcium-dependent protein kinase 1 73 156 - -
Stsc120868g00007 521 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120868g00007 521 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120868g00007 521 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Stsc120868g00007 521 FunFam calcium-dependent protein kinase 1 157 336 - -
Stsc120868g00007 521 ProSiteProfiles EF-hand calcium-binding domain profile. 479 513 IPR002048 GO:0005509
Stsc120868g00007 521 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Stsc120868g00007 521 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Stsc120868g00007 521 SMART efh_1 447 475 IPR002048 GO:0005509
Stsc120868g00007 521 SMART efh_1 375 403 IPR002048 GO:0005509
Stsc120868g00007 521 SMART efh_1 411 439 IPR002048 GO:0005509
Stsc120868g00007 521 SMART efh_1 482 510 IPR002048 GO:0005509
Stsc120868g00007 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 67 503 - -
Stsc120868g00007 521 Gene3D - 337 511 - -
Stsc120868g00007 521 SUPERFAMILY Protein kinase-like (PK-like) 68 340 IPR011009 -
Stsc120868g00007 521 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120868g00007 521 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Stsc120868g00007 521 Pfam EF-hand domain pair 446 508 IPR002048 GO:0005509
Stsc120868g00007 521 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Stsc120868g00007 521 CDD STKc_CAMK 71 328 - -
Stsc120868g00007 521 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Stsc120868g00007 521 SUPERFAMILY EF-hand 368 509 IPR011992 -
Stsc120868g00007 521 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Stsc120868g00007 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc120868g00007 521 MobiDBLite consensus disorder prediction 1 37 - -
Stsc120868g00007 521 FunFam Calcium-dependent protein kinase 1 336 511 - -
Stsc120868g00007 521 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Stsc120868g00007 521 MobiDBLite consensus disorder prediction 1 60 - -
Stsc120868g00007 521 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Stsc120868g00007 521 Gene3D Transferase(Phosphotransferase) domain 1 157 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120868g00007 Stsc-Chr120868 33382 36975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120868g00007 57 520 EF-hand Containing Proteins AT4G23650 80.860 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc120868g00007 Pkinase 3.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120868g00007 K13412 - qsa:O6P43_034294 880.552