Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120867g00024 ATGAGTCGAGGGGGTGCAGTTGGAGCTAAGGGAAAGAAGAAGGGTGCAACATTCACCATTGATTGCACAAAACCAGTTGAGGACAAGATTATGGACATTGCTTCTCTTGAGAAGTTCCTTCAAGAGAGGATCAAGGTTGGTGGCAAGGCTGGTGCTCTTGGTGATTCTGTCACTGTCTCCCGTGAGAAGAACAAGATCACTGTCACCTCTGACAGTAACTTCTCCAAGCGGTACTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAATGTGCGTGATTGGCTCAGGGTGATTGCTTCTAACAAAGATAGGAATGTCTATGAACTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAAGAAGATTAA 375 0.4427 MSRGGAVGAKGKKKGATFTIDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120867g00024 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc120867g00024 124 PANTHER 60S RIBOSOMAL PROTEIN L22 3 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc120867g00024 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Stsc120867g00024 124 Gene3D - 6 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120867g00024 Stsc-Chr120867 102318 103347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120867g00024 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 7.60e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120867g00024 K02891 - csav:115723248 218.009