Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120867g00010 ATGGCTACTTCAGATCTATCTATAATGAACTTATTATTATCATCATTCACTGCCATTGTTATTATTTTCTCCAACTTGTCTTCTCTTGCATCTTCATCTTCCTCCATTTGCAACCTCACACCATATCCAGACTTCTGCGAATCCAATTCACCTTCCAGAGGCCGCAGTGACATACATAGCTATGGCCGATTATTCGCAAGCAAATCCCTCACATCATCTACAAAGTTCCGCTCATTAGTCTCTAAGTATCTCAAACATCCTTCCAGAAACAATTTATCTGACTCCATGTGTCTTGCCCTTAAAGATTGCTACCTTCTAAGTGACCTCAACGTAGATTTCTGGACCAACACTCTCAACACCATAAATTCCACTGACACACTCAGCACCTCAGAGGAAGAAGATTATTTGCATAGCCTGATTAGTGCTACTTTAACCAACCACGACACATGCTTAGATGGCATCCAACAAGCCACAACCACACAGCAGGATCCGGATGAATCACTCATTAGCAGTATCTCCAATGGGACCATGTTTTACAGCATATCCCTTGCATTTTTCAAGCACGGTTGGGGAAGAGGAAGAGGAAGAGGAAGACAACTGTTTCAGTTAGATTTTGAGGAGAATGTTACTGTGAGCCAAACGGTGGTGGTGAACCCAGATGGGTCTGGAGACTACACAACTATTAGTGATGCAGTGGATGCAGCACCAAACAACACCCGTGGTATCAATGGCTATTTTGTAATTTATGTGGTTGCAGGAGTCTATGAAGAATATGTTTCCATTCCAAAAACCAAGCAGTATTTGATGATGATAGGTGATGGTATCGACCAGACTATAGTCACCGGAAATCGGAGCGTCGTTGATGGCTGGACAACCTTCAACTCTGCCACCTTTGCTGTGGTTGCACAAGGCTTTGTGGCGGTGAACATGACATTTCGCAACACAGCCGGAGCAATTAACCACCAAGCAGTGGCGCTTCGGAGCGGGGCAGATCTATCTGCATTTTATAGCTGTAGCTTTGAAGGGTACCAAGACACATTGTACACACATTCTATGAGGCAATTCTACAGAAACTGCGACATTTATGGCACTGTGGACTTCATATTTGGCAATGCAGCTGTTGTCCTTCAAGATTGTAACATCTACCCAAGATTACCGATGAGTAACCAATTCAATGCAATCACTGCACAGGGTAGAACTGATGTGAACCAAAACACTGGCACCTCCATACACAAGTGCACCATAATGGCCGCAGATGAGTTAGCCGCTAGCAACGGCACCACACAAACGTACCTAGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTTACATGCAATCTTTCATGGATAGCTTTATCAATCCATCGGGTTGGATTGCTTGGTCAGGGGACTTTGCCTTAGACACCCTTTTTTATGCTGAATATGATAATTGGGGAGCAGGATCAAACACCAGTAGCAGGGTTTCTTGGCCAGGTTGCGATGTGGCTTTGGATGACATAGGTGCAACTAATTTCACGGTTTCCAATTTCATATTTGGTGATTTTTGGCTTCCTGCCACTGGAGTACCATTTTTAGCTGGGGGAGACCCACAGAGGAACAAGAGACTCGTCCTTATAGGAGTCTCAACCTTTCTATTGGTGGCTATGGTGGTGGCCGTCACACTCAGCGTCACCCTTAACAAGACAAACAGCGCCGATTCAAAGGATGACGGCCAGAACAAGGTTGCATCATCCATGAAAGCAGTGGAGAAACTGTGCGCCCCTACAGATTACCCAGAGGAATGCCGGGATTCATTGTCCGCAGAGGCCGGCAACACCACCGACCCAAGGGAACTCATCAAGCTCGCATTCAACATCACTATCAAGAAGATAAGCAATGGCCTCGAGCAGACCCAGATGCTCCAGGATTTGGAGAAGGACCCCATGGCCAAACAGGCTCTCGACTCATGCAAGCAACTCATGGATCTCTCCATTGACGAGTTCAACAGGTCCCTCGAGAAGCTTGGAAGGTTCGACCTCAACAACCTCGAGAACATTCTCGGCAACTTGAAGGTCTGGCTCAGCGGCGCCATCACCTACCAGGAAACCTGCCTTGACGGCTTCGAAAACACCACCAGCGACGCAGGCGAGCAGATGAAGGAATTCTTGAAGACCGCCATGCACATGAGCAGCAACGGCCTCGCCATCATCACCGACCTCGACGCCACCATGAGCAGCTTTCGTCTCCCATCCGCCAATAATGCTGCCGGAGCCCGCCGCCTGATGTCCGAGGATGACGACAACGATCTCCCCGAGTGGGTCGAGGACCGCGTGGGCGTCCGCAAGCTTATGGCTACCGTTGCCGGCGGAAGAAGATTCAAGGCTCACGTGACAGTGGCCAAGGATGGGTCTGGAGATTTCAAGACCGTTACGGAGGCCTTGAGGAAGGTTCCTCCTCAGAACAAGAAGCCTTTCATCATCCACATCAAGGAAGGCGTCTACCAGGAGTACGTTGAAGTCCCCAGGAACATGACACACGTCGTCTTCATCGGCGATGGCGGTAACAAGTCCCGCATCACCGGAAACAAGAACTTCATCGATGGCGTTAACACTTACAAGACCGCGACTGTTGCTGTTCAAGGAGACTACTTCGTTGCCATGGGAGTCGGGTTCGAGAACTCAGCCGGAGCAGAGAAGCACCAGGCAGTGGCTCTGAGGGTTCAAGCAGACAAATCCATCTTCTTCAAGTGCAGATTTGACGGTTACCAAGACACACTCTACGCACACACCATGCGTCAGTTCTACAGGGACTGCGTCATCTCAGGCACCATCGATTTCATCTTCGGTGATGCTGTCTCAGTCTTCCAGAACTGCACCTTCGAGGTCAGGAAGCCATTGTCAAACCAACAGTGCATTGTCACAGCACAAGGCAGGAAGGAGAGGTACCAGCCCACAGGAATAGTCATCCAGGGTGGCTCCTTCGTGGCCGACCCAGCATACTACCCAGTCAGGTTCACCAACAAGGCCTACCTCGCTCGTCCATGGAAGAATTACTCAAGGACCGTCTTCATGGATGCCTTCATTGATGACTTGATCACACCCGAAGGTTACTTGCCATGGCAAACTCCCGAGGGACTCACCGGCATGGACACATGCTTCTACGCTGAGTTCAACAACCGTGGCCCCGGCGCCGACAAAAGCAAGCGTGTCAACTGGATTGGTGTCAAGAAAGACTTCACCGCAGCACAAGCAAGCACTTATAGCCCATCCTCCTTCTTCCGTGGAGATGAGTGGATTAAGGTTACCAAGATTCCATACAACCCTGGAAAAGCCGCCCCAGCTTCCAATGAACAAATTGCTGCCTCCATATTAGCGCGCTATGCAGCTGCCCCTAAAAGCAGCAAAGCCTCTGCTCCTACTGCTTCCTCCGTAAATGTAGATGTTTCTGTCACTTCCAATGCTTCTTCTCCTCCAACCGCCGCCATCACGGCCACCTCTGATTCCTCCCCAGCTCCTTCCCCCGAAGCATAA 3510 0.4946 MATSDLSIMNLLLSSFTAIVIIFSNLSSLASSSSSICNLTPYPDFCESNSPSRGRSDIHSYGRLFASKSLTSSTKFRSLVSKYLKHPSRNNLSDSMCLALKDCYLLSDLNVDFWTNTLNTINSTDTLSTSEEEDYLHSLISATLTNHDTCLDGIQQATTTQQDPDESLISSISNGTMFYSISLAFFKHGWGRGRGRGRQLFQLDFEENVTVSQTVVVNPDGSGDYTTISDAVDAAPNNTRGINGYFVIYVVAGVYEEYVSIPKTKQYLMMIGDGIDQTIVTGNRSVVDGWTTFNSATFAVVAQGFVAVNMTFRNTAGAINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSMRQFYRNCDIYGTVDFIFGNAAVVLQDCNIYPRLPMSNQFNAITAQGRTDVNQNTGTSIHKCTIMAADELAASNGTTQTYLGRPWKQYSRTVYMQSFMDSFINPSGWIAWSGDFALDTLFYAEYDNWGAGSNTSSRVSWPGCDVALDDIGATNFTVSNFIFGDFWLPATGVPFLAGGDPQRNKRLVLIGVSTFLLVAMVVAVTLSVTLNKTNSADSKDDGQNKVASSMKAVEKLCAPTDYPEECRDSLSAEAGNTTDPRELIKLAFNITIKKISNGLEQTQMLQDLEKDPMAKQALDSCKQLMDLSIDEFNRSLEKLGRFDLNNLENILGNLKVWLSGAITYQETCLDGFENTTSDAGEQMKEFLKTAMHMSSNGLAIITDLDATMSSFRLPSANNAAGARRLMSEDDDNDLPEWVEDRVGVRKLMATVAGGRRFKAHVTVAKDGSGDFKTVTEALRKVPPQNKKPFIIHIKEGVYQEYVEVPRNMTHVVFIGDGGNKSRITGNKNFIDGVNTYKTATVAVQGDYFVAMGVGFENSAGAEKHQAVALRVQADKSIFFKCRFDGYQDTLYAHTMRQFYRDCVISGTIDFIFGDAVSVFQNCTFEVRKPLSNQQCIVTAQGRKERYQPTGIVIQGGSFVADPAYYPVRFTNKAYLARPWKNYSRTVFMDAFIDDLITPEGYLPWQTPEGLTGMDTCFYAEFNNRGPGADKSKRVNWIGVKKDFTAAQASTYSPSSFFRGDEWIKVTKIPYNPGKAAPASNEQIAASILARYAAAPKSSKASAPTASSVNVDVSVTSNASSPPTAAITATSDSSPAPSPEA 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120867g00010 1169 Pfam Pectinesterase 789 1089 IPR000070 GO:0030599|GO:0042545
Stsc120867g00010 1169 Pfam Pectinesterase 215 514 IPR000070 GO:0030599|GO:0042545
Stsc120867g00010 1169 SUPERFAMILY Pectin lyase-like 786 1100 IPR011050 -
Stsc120867g00010 1169 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 580 732 IPR035513 -
Stsc120867g00010 1169 MobiDBLite consensus disorder prediction 1126 1169 - -
Stsc120867g00010 1169 SMART PMEI_2 577 729 IPR006501 GO:0004857
Stsc120867g00010 1169 SMART PMEI_2 28 185 IPR006501 GO:0004857
Stsc120867g00010 1169 Pfam Plant invertase/pectin methylesterase inhibitor 581 729 IPR006501 GO:0004857
Stsc120867g00010 1169 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Stsc120867g00010 1169 Gene3D Invertase/pectin methylesterase inhibitor family protein 576 734 IPR035513 -
Stsc120867g00010 1169 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 188 IPR035513 -
Stsc120867g00010 1169 PANTHER PECTINESTERASE 545 1095 - -
Stsc120867g00010 1169 SUPERFAMILY Pectin lyase-like 210 526 IPR011050 -
Stsc120867g00010 1169 NCBIfam pectinesterase inhibitor domain 547 733 IPR006501 GO:0004857
Stsc120867g00010 1169 ProSitePatterns Pectinesterase signature 1. 814 833 IPR018040 -
Stsc120867g00010 1169 MobiDBLite consensus disorder prediction 1128 1169 - -
Stsc120867g00010 1169 FunFam Pectinesterase 208 528 - -
Stsc120867g00010 1169 CDD PMEI-like_3 36 190 - -
Stsc120867g00010 1169 FunFam Pectinesterase 578 734 - -
Stsc120867g00010 1169 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Stsc120867g00010 1169 CDD PMEI-like_3 585 735 - -
Stsc120867g00010 1169 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 188 IPR035513 -
Stsc120867g00010 1169 ProSitePatterns Pectinesterase signature 2. 933 942 IPR033131 -
Stsc120867g00010 1169 FunFam Pectinesterase 783 1103 - -
Stsc120867g00010 1169 Gene3D - 783 1103 IPR012334 -
Stsc120867g00010 1169 Gene3D - 208 528 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120867g00010 Stsc-Chr120867 49376 54038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120867g00010 98 530 Carbohydrate Esterase AT3G05610 40.659 1.14e-103 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120867g00010 K01051 - gmx:100801686 818.92