Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120867g00009 ATGTCCCTAACCTTATGCTTGCTGATATTGCAATTTGCAACTCTACTTGCATCTTCATCATCCTCCGATTCCTCCACAGACACAATTTGCAACCTCACACCCTATCCAACATATTGCAAATCCAATGCTCCTTCTAATCTCGAAAGAGGTGGCATCCATGAGTATGGGAGTTTCTATTCAAACAAGTCCCTGTCATCATCAATGGATCTTCTCTCATTGGTCTCTACCTACTTACAATCTCCCTCCAAATTCTCCCACTCAACCATTCTGGCCCTTCAAGATTGCCACCTCTTACTTGACCTCAACATAGATTTCTGGACCACCACTCTACAAACTATACAACACTCCACCAACAACAACAACAGCACCCTAACTAGCTCCGAGGCTGAAAACGTCCTTACCATGATTAGTGCTGCATTAACCAATCTTGATACCTGCTTAGACAGCCTTAACCAAGCCACGTCATCATCCCCTGACACCGACCTAGCAACCTCTATTTCAAACGGAACCATGTATTCTAGCATATCTCTTGCGCTCTTCAAGCAGGGTCGGGCGTCCAGCACAGCCACACCACAGAGTAGAAAGCTGTTATCAGATGCGTACGCATGGGAACAGAGGCTTTACGAGATAATCAGAAAGAGAGGGAGAAAGCTGCTTCAGAGTGCTCCTGACGGTGTTGTTGTGAACCAAACGGTGGTGGTGAACCCGGATGGGTCTGGAAACTACACAACCATAACCGATGCGGTGAATGCTTCACCCAACAACACCGGTGGGACCAATGGCTTCTTTGTGATCTATGTGGTTGCAGGAGTGTATGAAGAGTATGTATCTATTCCGAAAAACAAGCAGTACTTGATGATGATCGGTGATGGTATTAACCAGACCATAATTACCGGCAATCACAGCGCCGGTACTAACTACACCACCTTCAATTCTTATTCATTTGCTGTGGTTGCGCAAGGATTCGTGGCCATGAACATAACATTTCGCAACACAGCAGGAGCAAGCAATTACCAAGCGGTAGCTCTTAGAAGCGGGGCAGATCTATCCGCATTCTACAATTGCAGCTTCGAAGGCTATCAAGACACCTTATACACACATTCAATGAGACAATTCTACAGAAATTGCGACATTTACGGCACAGTTGACTTCATATTCGGTAACGCTGCTGTTGTCTTCCAAGACTGTAACATCTTGCCACGTCTCCCAATGAGTGGCCAGTTCAACACCATCACAGCACAGGGAAGAACTGATATTAACCAAAACACGGGCACCTCTATTCACAACTGTACCATAACTGCCGCTACCAACTTAGGCACCACCAAAACCTATCTAGGGAGGCCATGGAAGGAGTACTCAAGAACGGTTTACATGCAGTCTTTCATGGACAGTTTGATTGATCCTGCTGGTTGGGCAGAGTGGTCAGGGACCTTGTATTTGGACACACTTTATTATGCGGAATATAATAATTCGGGTCCTGGATCTAACACTACTAATAGGGTTACTTGGTCAGGCTACCATATCATTAATGCCACTGATGCACAGACTTTCACAGTTTCCAATTTCATATCCGGAGGTGCTTGGTTGCCTGCTACAGGGGTCCCCTACTTCCTTGATTTAATTTAA 1626 0.4557 MSLTLCLLILQFATLLASSSSSDSSTDTICNLTPYPTYCKSNAPSNLERGGIHEYGSFYSNKSLSSSMDLLSLVSTYLQSPSKFSHSTILALQDCHLLLDLNIDFWTTTLQTIQHSTNNNNSTLTSSEAENVLTMISAALTNLDTCLDSLNQATSSSPDTDLATSISNGTMYSSISLALFKQGRASSTATPQSRKLLSDAYAWEQRLYEIIRKRGRKLLQSAPDGVVVNQTVVVNPDGSGNYTTITDAVNASPNNTGGTNGFFVIYVVAGVYEEYVSIPKNKQYLMMIGDGINQTIITGNHSAGTNYTTFNSYSFAVVAQGFVAMNITFRNTAGASNYQAVALRSGADLSAFYNCSFEGYQDTLYTHSMRQFYRNCDIYGTVDFIFGNAAVVFQDCNILPRLPMSGQFNTITAQGRTDINQNTGTSIHNCTITAATNLGTTKTYLGRPWKEYSRTVYMQSFMDSLIDPAGWAEWSGTLYLDTLYYAEYNNSGPGSNTTNRVTWSGYHIINATDAQTFTVSNFISGGAWLPATGVPYFLDLI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120867g00009 541 PANTHER PECTINESTERASE 13 530 - -
Stsc120867g00009 541 CDD PMEI-like_3 29 181 - -
Stsc120867g00009 541 Gene3D - 225 540 IPR012334 -
Stsc120867g00009 541 NCBIfam pectinesterase inhibitor domain 3 182 IPR006501 GO:0004857
Stsc120867g00009 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 181 IPR035513 -
Stsc120867g00009 541 SUPERFAMILY Pectin lyase-like 227 538 IPR011050 -
Stsc120867g00009 541 SMART PMEI_2 21 179 IPR006501 GO:0004857
Stsc120867g00009 541 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Stsc120867g00009 541 Pfam Pectinesterase 232 525 IPR000070 GO:0030599|GO:0042545
Stsc120867g00009 541 FunFam Pectinesterase 226 540 - -
Stsc120867g00009 541 Pfam Plant invertase/pectin methylesterase inhibitor 27 179 IPR006501 GO:0004857
Stsc120867g00009 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 182 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120867g00009 Stsc-Chr120867 46627 48870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120867g00009 3 541 Carbohydrate Esterase AT4G02330 51.394 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120867g00009 K01051 - gmx:100801141 750.74