Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120867g00008 ATGGCTTTGCTTAATCTCTTTTTCATCCTCATGCTTTTACCCTCATCATTTGAGGCTTCACTTTCAGATGAAATCCCCACCTCCTCCTCAGCCATCGAAACCCAAGACCTGAATTCCATGATTGCACAAGCCTGCATGAACATTGAAAACCAAAACTCATGCCTCGCCAACATCCAAAACGAGCTCGTCAAGATCGGCCCCCCAAGCCCCACATCGGTGTTGAGCGCCGCACTCGGTGCGACGATCAACGAAGCAAGGGGCGCCATTGACAAGATCACAAAGTTCACAACGTTCTCCGTGAGCAACCGCGAGCAACTAGCCATAGAGGACTGCAAGGAGCTTCTAGACTATTCCGTTTCGGAGCTTGCATGGTCCATGGGAGAGATGAGAAGAATCCGTGGCGGAGATACAAGCGCGCAATACGAGGGAAACCTGGAAGCGTGGCTAAGTGCAGCTCTGAGCAACCAAGACACTTGCATTGAAGGCTTTGAAGGTACGGACAGGCGCCTCGAGAGTTACATTAGCGGAAGCTTAACGCAAGTTACGCAGCTCATAAGCAATGTTTTATCCCTCTACACTCAACTCCATAAATTACCATTCAGCCCTCCCAGGAAGAGTAATAATAATGTGACAACCATGGTTGTTGTTGATGATGAGTTTCCGGAATGGATGAGCGAGGGTGACGTGGAGCTGCTTAAGTCGAAATCGGCTCCGCATGCTCGTGCTGATGCTGTGGTGGCGTTGGATGGGAGTGGGCATTACAGGAGCATCATGGAGGCAGTTAATGCTGCTCCGAGTCATAGTAACAGAAGGTATGTGATATACGTGAAGCAAGGACTGTACAGGGAGAACGTGGATATGAAGAAGAAGATGACCAACATTATGCTCGTTGGTGATGGTATTGGCAAAACCATTCTCACCAGCAACCGCAACTTCATGCAAGGATGGACTACCTTTAGAACTGCTACACTTGCTGTATCCGGGAAAGGTTTCATTGCAAGGGACATGACATTCAGGAACACAGCTGGACCAGTGAACCACCAAGCAGTGGCACTTCGTGTGGACTCGGACCAATCAGCGTTCTACAGGTGTAGCATAGAAGGATTCCAAGACACACTTTACGCTCATTCCCTGCGTCAATTTTACCGCGAATGTGAGATTTACGGCACCATTGACTTCATCTTTGGCAACGGTGCTGCAGTCTTGCAAAACTGCAAGATCTACACTAGAGTCCCTCTCCCGCTACAGAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACACCAGAGCACCGGCTTCACAATCCAGGATAGCTTCATTCTGGCAACTCAGCCCACTTATTTGGGCCGGCCCTGGAAAGAGTACTCAAGAACAGTTTATATCAACACCTACATGAGTGCCCAAGTTCAGCCTCAAGGGTGGCTTGAGTGGTTTGGGAACTTTGCATTGGACACATTGTGGTACGGTGAATATAGGAACTATGGGCCTGGGTCAGCACTTGGTGGAAGGGTGAAATGGCCCGGTTTTCATGTTATTAAGAATCCTGCTGCAGCTAGTTACTTTACGGTTCAGAGGTTCATTAACGGTAACTCATGGTTGCCAAGGACAGGTGTCAAGTTCACTTCAGGCTTGACCAATTGA 1644 0.4897 MALLNLFFILMLLPSSFEASLSDEIPTSSSAIETQDLNSMIAQACMNIENQNSCLANIQNELVKIGPPSPTSVLSAALGATINEARGAIDKITKFTTFSVSNREQLAIEDCKELLDYSVSELAWSMGEMRRIRGGDTSAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHKLPFSPPRKSNNNVTTMVVVDDEFPEWMSEGDVELLKSKSAPHARADAVVALDGSGHYRSIMEAVNAAPSHSNRRYVIYVKQGLYRENVDMKKKMTNIMLVGDGIGKTILTSNRNFMQGWTTFRTATLAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSFILATQPTYLGRPWKEYSRTVYINTYMSAQVQPQGWLEWFGNFALDTLWYGEYRNYGPGSALGGRVKWPGFHVIKNPAAASYFTVQRFINGNSWLPRTGVKFTSGLTN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120867g00008 547 Pfam Pectinesterase 243 531 IPR000070 GO:0030599|GO:0042545
Stsc120867g00008 547 FunFam Pectinesterase 38 197 - -
Stsc120867g00008 547 CDD PMEI-like_3 44 197 - -
Stsc120867g00008 547 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Stsc120867g00008 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Stsc120867g00008 547 SMART PMEI_2 36 191 IPR006501 GO:0004857
Stsc120867g00008 547 NCBIfam pectinesterase inhibitor domain 22 196 IPR006501 GO:0004857
Stsc120867g00008 547 SUPERFAMILY Pectin lyase-like 239 544 IPR011050 -
Stsc120867g00008 547 FunFam Pectinesterase 237 545 - -
Stsc120867g00008 547 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Stsc120867g00008 547 Gene3D - 238 545 IPR012334 -
Stsc120867g00008 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 196 IPR035513 -
Stsc120867g00008 547 PANTHER PECTINESTERASE 16 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120867g00008 Stsc-Chr120867 42100 44828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120867g00008 1 547 Carbohydrate Esterase AT3G05620 60.179 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120867g00008 K01051 - gmx:100810565 917.531