Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120866g00028 ATGAAAGGCGCAATGAGGAGATGGAAAGAGGAAAGCAGAGTAGAACTTACCCTGAGTGAGTTGGACACTGAGACCCTTCAACAAAGATTCGCATTCGCTTTCGCAATGCCCAACAAACACCAACAACTGCTCACACTACTCACACACGCACTGGGAGAGAACAGACACAGGACCCTCACGCCGATGAAGGGACCCGGCCACAATGCCACCGCCATTCACCCCGGAGGCCGTGGCCGGAATCTCCTCGTTGGTGTGAAGTTGGATCCCTCGTGCCGGGAGCTTCTCACGTGGACGCTCCTCAAGGTCGCCGAGCCCGGTGACGTCGTCATTGCGCTTCACGCCGTCCCCTCAGAGAATGCTGCATCTATGCTCTCTCTTGTGAAGGCTTTTGATTCAGTTCTTGATGTGTACCAAGGCTTCTGCCACTTGAAGCAGATTGAGCTGAAGCTTAAAGTGTGTAGAGGCACATCGGCACGGAAACTGCTTGTGCAGGAAGCTGAATCTCTTGGTGCTGATACGGTCATTTTAGGAACTTCTCAGAGCTTTCGAACCCTCCGGTCTTCGGTAGCCATTGCCAAATACTGCGCAAAGAAACTGCCTAAGTGTGTATCTATATATGCTGTTGATAGTGGCAAAGTCACATTCCTCAGAGAAGCTGCTGTTATGCCTAGTGATCAAGTAAAACTGTTCAGAAGCAAATCCGAAGTGAATTATCGAAAGAGAAGCCAGAAGAGCAATGAATGCTGTGTAAGGCTGTTAGTATTGCCAGATAGTTCTACAACCACACATAAGGAGGGGTTGACTGATAGTCCTAGACAGGAAAATTCACTGGCATTGGTGCCAATTCAAAAGCCTGATGATGCTTCTAGTTATTTGATTCCGGTGGTCAAATCAGACTATTCAGAACCAGATAGTTCTGCAACTCTACTCAAGGAAGGATTGAATGATAGTCATGGACAGGAAAAATCACTGGCTTTGGTGCCAATTCAAAAGCCCGATGATGCTTCTAGCTATTTGAATGCAGTGGTAAAGTCAGAGCGATTAAAACGAGGTTGGTTGCTACTGCGCCAGGTATTTCTGCCAAAAAGGCAAAAGCAGAAATCTTTGGTGAAAAATACCCCTTCTTTTCAACGGCCATCAGAACAACACAACTCTTCTTCTGTAGTCCATCTCAACCTAGATGCAGAGACTGGTGCCATTGTGCCATATGAATCAGATGATATTGTTACTCCTTCCCCACTTTTTAGTGATTCCAGTTTAACTCCTGAAGAATTGTTGGCCATAAAAGAGAAATACTCATCTTCCTGCAAATTGTATAGTTTCCATGAACTTGTAGCCGCAACAGCAAACTTCTCGAGTGAAAATTTGGTTGGAATAGGTGGTTGTAGCCATGTTTACAGAGGATGTATTGCAGAGGGCAAGGAATTGGCAATAAAAATTTTAAAGCCATCTGAAAATGCGATGAAGGATTTTGTTAAGGAAATTGAGATCATCACAACCTTGCATCATAAGAACATAATATCTCTATCTGGATTTTGTGTTCACGGCAATAATTTACTACTGGTTTATGATCTTTTATCAAGGGGAAGCTTAGAAAAAAACCTCTATGGCAACAAGACTGATTGTAGTACATTCGGTTGGCAAGAGAGGTACAAGGTAGCTGTAGGTGTAGCTGAGGCATTGAACCATCTTCATAATGGATCTACACATCCTGTGATTCATAGGGATGTGAAATCTTCCAATATCCTTCTTTCAGATGATTTTGAGCCTCGGCTGTCGGATTTTGGACTCGCTAGATGGGGTTCTTCTTCATCCCATACAAGTACTGATGTAGCTGGAACTTTTGGATACCTAGCTCCTGAGTATTTTATGCATGGCAAAGTGACTGACAAAATTGATGTATATGCTTTTGGTGTTGTACTTCTTGAGCTTCTCACAAGTAAGAAGCCAATTAATAATGTATGTCCTATGGTCCAACAGAGCCTTGTTACGTGGGCAACGCCAATTTTGAAGGAAGGGAAGCTTTCTCAGTTGCTTGATCCAAGTCTAGGTAGTGATTCCGACAATTGTTACATTCATAGAATGGTTCTAGCTGCTACTCTTTGCATCAGACGATCTTTTAGATGGCGGCCTCATATCAGCATTATATTGAAGCTCCTACAAGGTGTTGAAGAAGTGACAAGGTGGGCAGAACAAGAGGTTAATGCATCAGAGGAGCTCGACAGATTGGATGGGGAACCAGTTTCAATTGATATTCAGTCGCATCTAAGCCTTGCTTTGCTGGACATAGAGGATGATACAGATTCAATTAGCAGCACTGAGCAGTTTATCTCAGCCGAAGACTATTTTAGGGGAAGATGTAGTCGCTCGTCGAGTTTTGCCTAG 2385 0.4403 MKGAMRRWKEESRVELTLSELDTETLQQRFAFAFAMPNKHQQLLTLLTHALGENRHRTLTPMKGPGHNATAIHPGGRGRNLLVGVKLDPSCRELLTWTLLKVAEPGDVVIALHAVPSENAASMLSLVKAFDSVLDVYQGFCHLKQIELKLKVCRGTSARKLLVQEAESLGADTVILGTSQSFRTLRSSVAIAKYCAKKLPKCVSIYAVDSGKVTFLREAAVMPSDQVKLFRSKSEVNYRKRSQKSNECCVRLLVLPDSSTTTHKEGLTDSPRQENSLALVPIQKPDDASSYLIPVVKSDYSEPDSSATLLKEGLNDSHGQEKSLALVPIQKPDDASSYLNAVVKSERLKRGWLLLRQVFLPKRQKQKSLVKNTPSFQRPSEQHNSSSVVHLNLDAETGAIVPYESDDIVTPSPLFSDSSLTPEELLAIKEKYSSSCKLYSFHELVAATANFSSENLVGIGGCSHVYRGCIAEGKELAIKILKPSENAMKDFVKEIEIITTLHHKNIISLSGFCVHGNNLLLVYDLLSRGSLEKNLYGNKTDCSTFGWQERYKVAVGVAEALNHLHNGSTHPVIHRDVKSSNILLSDDFEPRLSDFGLARWGSSSSHTSTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLTSKKPINNVCPMVQQSLVTWATPILKEGKLSQLLDPSLGSDSDNCYIHRMVLAATLCIRRSFRWRPHISIILKLLQGVEEVTRWAEQEVNASEELDRLDGEPVSIDIQSHLSLALLDIEDDTDSISSTEQFISAEDYFRGRCSRSSSFA 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120866g00028 794 Gene3D Transferase(Phosphotransferase) domain 1 526 744 - -
Stsc120866g00028 794 Gene3D HUPs 65 201 IPR014729 -
Stsc120866g00028 794 ProSiteProfiles Protein kinase domain profile. 451 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120866g00028 794 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 78 209 - -
Stsc120866g00028 794 FunFam Putative receptor-like serine/threonine-protein kinase 526 736 - -
Stsc120866g00028 794 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 79 179 - -
Stsc120866g00028 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Stsc120866g00028 794 Gene3D Phosphorylase Kinase; domain 1 418 525 - -
Stsc120866g00028 794 Pfam Protein kinase domain 453 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120866g00028 794 Pfam Universal stress protein family 79 201 IPR006016 -
Stsc120866g00028 794 SUPERFAMILY Protein kinase-like (PK-like) 432 729 IPR011009 -
Stsc120866g00028 794 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 420 525 - -
Stsc120866g00028 794 CDD USP_Like 80 203 - -
Stsc120866g00028 794 PANTHER OS08G0249100 PROTEIN 266 739 IPR046958 -
Stsc120866g00028 794 SMART serkin_6 451 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120866g00028 Stsc-Chr120866 153285 156955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120866g00028 439 727 Trihelix Transcription Factor Family AT5G38560 40.940 3.25e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc120866g00028 Pkinase 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120866g00028 - - gmx:100815722 807.364