Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120866g00020 ATGGAAGATGAAAGCCATAACAATTTGCCAAATGGGTTCACCACAGAAAGCCCTGAAAGCCCTTGCTTAAAGAACAACAATAACCACCACAATAACAACAACAACAATAGCAACAACAATAACAACAACAAAGAACAAGATCGCTTTCTCCCCATAGCCAATGTCGGTAGAATCATGAAAAAAGTGATCCCGGCCAATGGAAAAATCTCAAAGGACGCAAAAGAGACGGTGCAAGAGTGCGTATCGGAGTTCATTAGCTTCGTGACAGGAGAAGCCTCCGACAAATGCCAAAGAGAAAAAAGAAAGACCATCAATGGTGACGATATTATATGGGCCATCACAACCCTAGGGTTTGAGGATTATGTGGAACCATTAAAATCCTATCTCCAAAAATATAGAGACATAGAAGGAGAAAAGCTTAATGTTCCAAAGCAACAACGCTCTGAACAGAGGCTACACCATCAGCATCAGCATCATCATCAACAACAACAACACCATCACCATAACCAACAAGATGAAAATAATCAAACACTAAATAGTGTATATACTTCAGCAAATCTCATTTCTCATCAACCTCCTTATGTAGCCACCGATCAACCATTTTCATTGCCGTTTTCACCAAATTCAATTCAGAAACAGTTACGACCGCAAGACCAGATTGATTCGGTTGGGCATTGGTATGAGTAA 687 0.4017 MEDESHNNLPNGFTTESPESPCLKNNNNHHNNNNNNSNNNNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKLNVPKQQRSEQRLHHQHQHHHQQQQHHHHNQQDENNQTLNSVYTSANLISHQPPYVATDQPFSLPFSPNSIQKQLRPQDQIDSVGHWYE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120866g00020 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Stsc120866g00020 228 SUPERFAMILY Histone-fold 46 176 IPR009072 GO:0046982
Stsc120866g00020 228 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Stsc120866g00020 228 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Stsc120866g00020 228 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Stsc120866g00020 228 FunFam Nuclear transcription factor Y subunit B-3 38 176 - -
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 143 173 - -
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 1 46 - -
Stsc120866g00020 228 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc120866g00020 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 7 46 - -
Stsc120866g00020 228 Gene3D Histone, subunit A 37 180 IPR009072 GO:0046982
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 198 218 - -
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 198 228 - -
Stsc120866g00020 228 Coils Coil 27 47 - -
Stsc120866g00020 228 MobiDBLite consensus disorder prediction 151 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120866g00020 Stsc-Chr120866 96460 97146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120866g00020 44 226 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.957 1.34e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc120866g00020 CBFD_NFYB_HMF 3.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120866g00020 K08065 - gmx:100778216 333.183