Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120866g00008 ATGAGTGAACCTGAAATGACCATTCCACACTTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTGGGTTCAGGTAACCTGACATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAACCACACCCTTCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCACAATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTTGCTGCTTTGAAACACACCCTTCTATCTCAAGAGGATGATGGTTCCTTAGAGAACAAGCTCGAGGCACTTGAGAAAATCAATGCCTTCTTTTCTGATGAGTATTGTTCTTTCAGCAGATCATGTTTCCTACAACTTGGTTTTTTGCCTATGCTCTTGGAACTAGTTTTTGGAGGAAGAACAACAGAAGAATCTCATGCTGTATCAAATAATGATCACATGAAATTTGTAGAGCTTGCAATTAGTTGCATTATGAAACTTCTGCATCTTGGTAATGATGATTTGGAAGCTCTAAATATTATCAAAGATGATGAGTCTAAGTTAGCAACATTTGTGCTATTATTCGAAAACGGCACTAATTCTGTTAAATCTAGCTTGTGTCATGTTATAGAGTCAGCATCATCATCTGAGACAACACAAGAGTTATGTTATATCTTTGGAAACACTCAGAAACTAGTGCATGAGATTGTTCTAGTACTTGTTCAAAATTGTGATGCTTCTGAGGATGCAGTTAAGGCCATTTCAGCACTGTGTTCATTGAATTCCAACAGAGAGAGCTTGGTGAGAGAAGGAGCAATAGAAGGGATCTTAAGATACATTTCAATGATTTCATCATCATCAGGTAATGAAACTACTCAAATTAGAGGACAAAACAAGAAACTTCTGGCTCCGATGGCATTGGGAATAGTAGTGAAACTATTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAATCACCCAAATGGAGTTGATACTTTGGTGAAGATGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGAGGGTGCTGTTGAGGCACTTTCCCTTGTTTGTTGTGATTATATGCATGCAAGAGAGCAAGCCATTGGTGCTGGGGTTATTACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGGCCAGAATGCTCCTAAAATTGTTCAAATCCAAGTGGATTCAGATGTCAAAGTAG 1263 0.4014 MSEPEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGSGNLTCPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPQFHPGNSATIDSLAALKHTLLSQEDDGSLENKLEALEKINAFFSDEYCSFSRSCFLQLGFLPMLLELVFGGRTTEESHAVSNNDHMKFVELAISCIMKLLHLGNDDLEALNIIKDDESKLATFVLLFENGTNSVKSSLCHVIESASSSETTQELCYIFGNTQKLVHEIVLVLVQNCDASEDAVKAISALCSLNSNRESLVREGAIEGILRYISMISSSSGNETTQIRGQNKKLLAPMALGIVVKLLELESGRETLVNHPNGVDTLVKMVFSVKCDQDCSEGAVEALSLVCCDYMHAREQAIGAGVITKLLLLMQSHCATTTKSKARMLLKLFKSKWIQMSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120866g00008 420 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Stsc120866g00008 420 SUPERFAMILY ARM repeat 98 293 IPR016024 -
Stsc120866g00008 420 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Stsc120866g00008 420 CDD RING-Ubox_PUB 9 56 IPR045210 -
Stsc120866g00008 420 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Stsc120866g00008 420 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Stsc120866g00008 420 SUPERFAMILY ARM repeat 252 410 IPR016024 -
Stsc120866g00008 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Stsc120866g00008 420 PANTHER WDSAM1 PROTEIN 5 416 IPR045185 GO:0061630
Stsc120866g00008 420 SUPERFAMILY RING/U-box 3 76 - -
Stsc120866g00008 420 Gene3D - 89 417 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120866g00008 Stsc-Chr120866 42099 43428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120866g00008 6 415 U-box Gene Family AT1G49780 30.024 1.12e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120866g00008 - - adu:107479288 736.102