Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120866g00004 ATGCCGGCCTGGTGGAGTAGAAAATCCTCCAAGAACAAACAGCACAAACAGGGCGACGCCGCTGAAGACGATGAAGACACACGTGGCAAGCACAAGCTCAATCTCACGGGATCGCCGATTAGCATTATCGGCACCAGGAAGAAAGCCAAAGACAAGGAGAAGAACAAGAACCACAAGAGCTTCGACGAGCTCTTCGTCTCTCGCAACTCACCCATGACAAGCAAGGAATTCGCCGCCGTCGACGGTAACAGCAGCGGCAGCAGAGACCCAGACAAAGGGGTTCCGTTGCCTCGTCCTTCCGTTTCGGCCAATCACAGCTTCAGCAACGATCAAGGTCTCGTCTTTGGATCTGCTTCTCTATCTGGTTCCAGCCTCAGCTCCTCCACTTCTTGCGATGAACACCCTATATCTCCTCAATTCGTCAACAACAGAGGACAAGGTGAAATCAAATTTCATGGGAGGCCAAAGAGCCCAGGTACTGGGTCGAGGGGACCGACGAGCCCTACATCGCCACTTCATCAGAGGATTTTGAGTCTTGACTCTCCTACAGGCAAGCAAGAGGATGGAAAAAGCGAATGTCACCCATTGCCTCTTCCCCCTGGCTCTCCTACTAGTCCTTCCACCCTTTCCACTCCGCGCGCAAGTGGGTCCTTTGAAAACATTGCGAATAATCTATCCAAGTGGAAGAAAGGAAAGCTTCTAGGAAGGGGAACTTTCGGGCATGTTTATCTCGGATTCAATAGTGAGAGTGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCCAACATCAAAAGAGTGCCTCAGACAACTTAACCAGGAGATAAACTTGCTTCATCAACTTTCACATCCAAACATTGTTCAATACTATGGGAGTGAACTGGGTGAAGAAACACTTTCAGTTTATTTGGAATATGTCTCTGGTGGTTCCATCCATAAATTGCTTCAGGAATATGGTTCATTTAAGGAGCCTGTCATTCAAAATTATACCCGGCAGATTGTATCTGGACTTGCATATTTGCACGCGAGAAATACAGTACACAGGGATATCAAAGGAGCTAACATACTTGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACTTATAAATTCTGCTGCCTCAGTACTCTCATTCAAGGGAAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACCAATGGCTATGGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCGAAACCTCCATGGAGTCAATATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGACATCCCTGAGCATCTTTCAGATGATGCCAAAAGCTTCATTAAGCTATGTTTAAATAGGGATCCATTAGCACGCCCAACAGCTCAAATGCTACTAGACCATCCCTTCATTCGTGACCAATCAGCAACAAAAGCTGTAAATGTCAGCATAACAAGAGATGCTTTCCCCCGCATGTTAGATGGAAGCCGGACGCCGCCTGTTTTGGAGCATCAATCCAATAGAACAAGTATAACGTCACTTGATGGAGATCATGCAACAAAGACGGCTCGAGCAGCTTCTCACGCATTAAGGAGCTCAAGAGACAACGCAAGAACAATCACATCGTTGCCAGTATCTCCCGCTTCAAGTCCATTGAGACAATACGGGACAGCACAAAAGAGTGGTTTCTTTTCTCCTCCTCATCCAAGTTACTCAATGATGGGGCAAAATACTTATAGTTTGAATGACATGTCGCCATATTCGGTGAGATCATCAAATGCCACATTCACTCTCGATCCTTGGCATGAAAAGTCTCGATACAAAGCCCAGACACCACTTGGTGGATCTCCAAGAATGAGATTCATTTGA 1908 0.4607 MPAWWSRKSSKNKQHKQGDAAEDDEDTRGKHKLNLTGSPISIIGTRKKAKDKEKNKNHKSFDELFVSRNSPMTSKEFAAVDGNSSGSRDPDKGVPLPRPSVSANHSFSNDQGLVFGSASLSGSSLSSSTSCDEHPISPQFVNNRGQGEIKFHGRPKSPGTGSRGPTSPTSPLHQRILSLDSPTGKQEDGKSECHPLPLPPGSPTSPSTLSTPRASGSFENIANNLSKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVRVVSDDPTSKECLRQLNQEINLLHQLSHPNIVQYYGSELGEETLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKLINSAASVLSFKGSPYWMAPEVVMNTNGYGLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPDIPEHLSDDAKSFIKLCLNRDPLARPTAQMLLDHPFIRDQSATKAVNVSITRDAFPRMLDGSRTPPVLEHQSNRTSITSLDGDHATKTARAASHALRSSRDNARTITSLPVSPASSPLRQYGTAQKSGFFSPPHPSYSMMGQNTYSLNDMSPYSVRSSNATFTLDPWHEKSRYKAQTPLGGSPRMRFI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120866g00004 635 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 1 216 - -
Stsc120866g00004 635 ProSiteProfiles Protein kinase domain profile. 228 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 45 63 - -
Stsc120866g00004 635 SMART serkin_6 228 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 160 181 - -
Stsc120866g00004 635 Gene3D Transferase(Phosphotransferase) domain 1 225 507 - -
Stsc120866g00004 635 FunFam Mitogen-activated protein kinase kinase kinase 226 508 - -
Stsc120866g00004 635 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 31 492 - -
Stsc120866g00004 635 Pfam Protein kinase domain 229 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120866g00004 635 SUPERFAMILY Protein kinase-like (PK-like) 205 509 IPR011009 -
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 12 32 - -
Stsc120866g00004 635 CDD STKc_MEKK1_plant 227 484 - -
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 101 144 - -
Stsc120866g00004 635 MobiDBLite consensus disorder prediction 64 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120866g00004 Stsc-Chr120866 27250 32142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120866g00004 1 509 MAP Kinase Kinase Kinase AT1G53570 59.125 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc120866g00004 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120866g00004 K04421 - gmx:100787064 831.247