Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120865g00009 ATGGAGTTCGGAGAAGGAGAGTTCAGTGTGGAAGAACAAGTGATGGTGAAACATTCTGAGATCATAAAGAACATGATCGAAGATGGGTCATGCAATGATGAAGAGAGCAAGATTCCATTAGATTCCGTTGACTCAAAGACCCTCAAGAAGGTGATCGAATACTGTAAGCACCACACTCACCATGAAAAGGACAAAGAAGAAGATATCAATGCTTGGAATGCTGAATTTCTCAAAGTTGATCCTAACACCCTTTATGATTTGTTGATGGCAGCAAATTATCTTAAAATTAGGAGTCTGTTGGATCTGATTTACGGAACTATAAAAAACATGATAAAGGGAAAGAAAATAGATGAGATACGCGCAGTCTTCAACATCAAAGATCATGGCTTCACTCCTCAAGAGGAAGAACAGAATCGCAAGGACTACCCACATTTTTATTAG 441 0.3878 MEFGEGEFSVEEQVMVKHSEIIKNMIEDGSCNDEESKIPLDSVDSKTLKKVIEYCKHHTHHEKDKEEDINAWNAEFLKVDPNTLYDLLMAANYLKIRSLLDLIYGTIKNMIKGKKIDEIRAVFNIKDHGFTPQEEEQNRKDYPHFY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120865g00009 146 PIRSF SCF_Skp 2 144 IPR016897 GO:0006511
Stsc120865g00009 146 Pfam Skp1 family, dimerisation domain 98 142 IPR016072 GO:0006511
Stsc120865g00009 146 Pfam Skp1 family, tetramerisation domain 7 59 IPR016073 GO:0006511
Stsc120865g00009 146 SUPERFAMILY Skp1 dimerisation domain-like 69 143 IPR036296 GO:0006511
Stsc120865g00009 146 PANTHER SKP1 7 140 IPR016897 GO:0006511
Stsc120865g00009 146 SMART skp1_3 7 96 IPR001232 GO:0006511
Stsc120865g00009 146 SUPERFAMILY POZ domain 12 62 IPR011333 -
Stsc120865g00009 146 CDD BTB_POZ_SKP1 7 111 - -
Stsc120865g00009 146 Gene3D Potassium Channel Kv1.1; Chain A 4 146 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120865g00009 Stsc-Chr120865 59316 60299 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc120865g00009 Skp1_POZ 6.3e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120865g00009 K03094 - ncol:116247723 132.88