Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120865g00007 ATGGATTCATTGAAGAAGATCACGCTATGGAGTTCAGAGAAGGAGAGGTTCAGTGTGGAAGAACAAGTGATGGTGAAACATTCTGAGATCATAAAGAACATGATCGAAGATGGATCATGCAATGATGAACAGAGCAAGATTCCATTAGATTCTGTTGACTCAAAGACCCTCAAGAAGGTGATCGAATACTGTAAGCACCACACTCACCATGAAAAGGACAAAGAAGAAGATATCAATGCTTGGAATGCTGAATTCCTCAAAGTTGATCCTAACACCCTTTATGATTTATTGATGGCAGCAAATTATCTTGAAATTAGGAGTCTGTTGAATCTGATTTATGGAACTATAAAAAACATGATAAAAGGAAAGAAAATAGATGAGATACGCGCAGTCTTCAACATCAAAGATCATGGCTTCACTCCTCAAGAGGAAGAACAGAATCGCAAGGACTACCCACATTTTTATTAG 468 0.3782 MDSLKKITLWSSEKERFSVEEQVMVKHSEIIKNMIEDGSCNDEQSKIPLDSVDSKTLKKVIEYCKHHTHHEKDKEEDINAWNAEFLKVDPNTLYDLLMAANYLEIRSLLNLIYGTIKNMIKGKKIDEIRAVFNIKDHGFTPQEEEQNRKDYPHFY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120865g00007 155 Pfam Skp1 family, tetramerisation domain 5 68 IPR016073 GO:0006511
Stsc120865g00007 155 PANTHER SKP1 5 149 IPR016897 GO:0006511
Stsc120865g00007 155 PIRSF SCF_Skp 1 153 IPR016897 GO:0006511
Stsc120865g00007 155 SUPERFAMILY POZ domain 5 71 IPR011333 -
Stsc120865g00007 155 CDD BTB_POZ_SKP1 6 120 - -
Stsc120865g00007 155 Pfam Skp1 family, dimerisation domain 107 151 IPR016072 GO:0006511
Stsc120865g00007 155 SUPERFAMILY Skp1 dimerisation domain-like 78 152 IPR036296 GO:0006511
Stsc120865g00007 155 Gene3D Potassium Channel Kv1.1; Chain A 2 155 IPR011333 -
Stsc120865g00007 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Stsc120865g00007 155 FunFam Elongin C transcription elongation factor 4 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120865g00007 Stsc-Chr120865 41153 42249 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc120865g00007 Skp1_POZ 3.3e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120865g00007 K03094 - gmx:100527683 142.51