Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120865g00002 ATGAGTTCTGCTCCAACACAAGATAGGCCTTCTTTGATGACAAGAACGGCCATGAGAATATCGAGATCGAGATGGTTCACATTCTTGAGGAGAGTATTCCACTACCAAAATGGGCCGAGTTCTTCTTATTCGTCAGAACTCGGCTCGAACCCTTTCAATTCCAGCACGTGGATGGTGCTGGAATTGGTGGCATTGGTGGTTCAAATAACAAGCACAACTTTCACTCTTGCGATTTCCAAGAGTGAGAGACCAATTTGGCCTATGAGGATTTGGGTAGCTGGATATGACTTTGCTTGTGTTCTTAATTTGTTTCTTCTTTGTGCTCGCTACCATCAAATTCATATCACCAGAGATGTTCTTAGCGATTTGGAACAGCAGAGATTCATTAATGGAGATGCAAGTTTAGAGAGGAGGTCACATTTGATGAGCAAATGCCGGAGTTCATTGGAGCTTTTCTTTGCAATGTGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGTTTTGGGTCATTCCAACAAGCCCCAAAACTCAATGTTATTTGCATAATCTTGCTCTCTTGGAATGCAATTTGCTACTCTTTCCCTTTTCTTTTGTTCTTGTTGCTATGTTGCATTGTTCCTTTGATTAGTACCCTCCTTGGTTACAACATGAATATGGGTTCTAATGCTAAGGGTGCTTCTGAGGATCAAATCTCTCAGATTCCAAGTTGGACATATAAACAACTTCATCATCATCATGCCTTAGATGATTCTTCTCAAACATTCATCAATGAAGATCAAGAGTGTTGTATTTGCTTGAACAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTGCCATGTCTTCCATCTAAACTGTGTGGATCAATGGCTAAGAATTATATCATGCTGTCCACTTTGTAAACAAGGATTACAGAGGTAG 930 0.4043 MSSAPTQDRPSLMTRTAMRISRSRWFTFLRRVFHYQNGPSSSYSSELGSNPFNSSTWMVLELVALVVQITSTTFTLAISKSERPIWPMRIWVAGYDFACVLNLFLLCARYHQIHITRDVLSDLEQQRFINGDASLERRSHLMSKCRSSLELFFAMWFVMGNVWAFDSRFGSFQQAPKLNVICIILLSWNAICYSFPFLLFLLLCCIVPLISTLLGYNMNMGSNAKGASEDQISQIPSWTYKQLHHHHALDDSSQTFINEDQECCICLNKYKDKEEVRQLPCCHVFHLNCVDQWLRIISCCPLCKQGLQR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120865g00002 309 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 11 307 - -
Stsc120865g00002 309 SMART ring_2 263 303 IPR001841 -
Stsc120865g00002 309 Pfam Ring finger domain 262 304 IPR001841 -
Stsc120865g00002 309 SUPERFAMILY RING/U-box 251 307 - -
Stsc120865g00002 309 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Stsc120865g00002 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 308 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120865g00002 Stsc-Chr120865 13151 16440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120865g00002 15 307 C3H Transcription Factor Family AT4G26580 64.527 2.39e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120865g00002 - - ahf:112791228 548.51