Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00039 ATGGAGGAATCACCATCTCCCAAGCCAGACCTCGAATCCACAACCACAACTCTAACATGCCGCGATTCCGAGCTCAGCAACAGCAATAGCAGCTTCTGCAGCAGCGAGCTCATGCTTCCAAACAAGAACAACGATAGAGGTGAAGGTGAGGTTGTGAACGGTTACATTGTGTACTCGCGAAGGAAAACGAAGAAGCAAGAGAAGAAGGCAATCGTGAAGGTGGAGGAGGAGAGTAGCGAGGTGGTGGTGATTCAAAACGACGTCGTTTTGGGGAGGCTGAAGAGGAATAGGAAGCCGACGTGGAAAACGGTGGTGGATGAGTGTGAAGTTGGAGAAGAAGAGAAAGCGGTGGTTTTAAAGATGAAGTCAGCGGAGAAGGTTGTGGTGGTTAACAGAAGACCGGTCACAGTTAAAGAGCTCTTCGACACTGGCTTGCTCGATGGCGTTCCCGTTTTTTACATGGGCTGCAAGAAGGATTCAACTTCCGGATTACGGGGTGTAATTCAAGATGGGGGAATATTGTGCTCATGCTGTATTTGCAATGGACGCAGGATTATTCCACCATCCCAATTCGAGATTCATGCTTGCAATACATACAAGAGAGCAGCACAGTATATTTGTCTTGAGAATGGGAAGAGCTTGCTTGACCTTTTGAGAGCATGCAGAGCAGTTCCCTTGCATGGTTTGGAGGTGGCAGTTCAAAATTTTCTTTGTTCCCCACCTGAAGAAAAATACTTTACCTGCAAAAGTTGCAGAGGGTGCTTCCCTTCTTCAAGTGTGGAAAGAGTGGGGCTTATATGCCAATCTTGTGTTGAGGAAAGGAAATCTGAAAACAATTCTATTAAAAGAGTTGGCAAAAGAGTCAGGTCTCCTAAACCAGTATCGTTTACCAGTCCATCAAGCACTTCTGAACTTTGTAATTCTTCACAAACTAAGAGACGCTGGAAGAAAAGAGCAAAGTCATCCAAACGGAATGGCACCTGCTCAGCTTTTTCCAAGAGTGCTTCAGATCCTATTCTATTCCAGAAGAGTCTGTGGAAAAGGAAAACAAAGTCATACAAACTGACAGTAAAATTGAACACTGCTCCAGTTACTTCAACTTCGTTGTGTCCAGTTACTTCAACTTCAACATGTTTATCTCCAGAAAGTAAGAGCCAGTGGAAGATTGCGAAAAAGTATCAGCGACTGCATAAATTAATTTTTGAAGAAAATGGATTACTTGATGGAGCCAAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGTAGGTATCAAAAGGGGCTCTGGAATTGTGTGTGGATGCTGTAACACACTGGTCAGCCCCTCACAATTTGAGGTACATGCAGGTTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAGATGGGATGTCTCTCCATNNNNNNNNNNTGTTTATACTAAAAGAACGCAAATACACTGCAAAGTATAATGATGATCTATGCGTTGTCTGTTGGAATGGTGGAAACCTGCTGCTCTGTGATGGATGCCCAAGGTCATTTCACAAAGAATGTGCATCAGTATCCAGCATTCCTCATGGTAATTGGTATTGTCAAATTTGCCGAAACATGTTCCAGAGAGAAAGTTTAGTTGCAGACAATGCCAATGCTGTGGCAGCAGAAAGGGTTGAAGGAGTTGGTCCTATTGAACAGATTGCCAGATGCATTCGCATAGTAAAAGATACTGACATTGAGATGGGTGGATGTGTTTTGTGCGGATGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGCACAATAATATTCTGTGATCAGTGTGAAAAGGAATACCATGTTGGTTGTTTGAGGGATCATAAGATGGCATTTTTAAAGGAGTTGCCTGAAGGGATTTGGATTTGTTGCGATGATTGCACAAGGATACATTCTATTTTGGGGAATATCCTGGCTCGGGTGCCTGAGACACTTCCTGAATCTCTCTTAGATGTAATAAAGATGAAGCAAGAGGAAATATTTTTAGGACTACCTAATGAGATTGATGTAAGATGGAGACTTCTTAATGGGAAAATTGCTAGCCCTCAAACTAGGCCATTCCTTTTGCAGGCTGTGTCAATGTTTCACGAATGTTTTGATCCTATTATTGATCCAGTTAGTGGAAGTGACCTTATTCCTGCCATGGTTTATGGAAGAAGTGTGCAGACTCAGGATTTTGGTGGATTTTATTGTGCATTATTAATGGTCAATTCATGTGTGGTATCTGTGGCTATGCTTCGAGTTTTTGGAAGAGATGTTGCGGAGCTTCCTTTAGTTGCAACGTGTTATAAGAACCGTGGAAAGGGTTACTTCCAAACGCTGTTCTCTTGCATTGAGAGGCTGCTAGCTTTCTTGAATGTGAAGAACTTTGTTCTCCCAGCTGCTGAGGAAGCAATATCTATATGGACCGATAAATTTGGGTTCAGCCTGATGAAACCTGAGCAGCTTAGCAATTATAGAAAGACCTTCAGTCAGATGATGGCATTCAAAGGGACAATTATGCTTGAAAAACCGGTTCCCTCATGTCGGATCGTCAATACTCGATCCTGA 2568 0.4291 MEESPSPKPDLESTTTTLTCRDSELSNSNSSFCSSELMLPNKNNDRGEGEVVNGYIVYSRRKTKKQEKKAIVKVEEESSEVVVIQNDVVLGRLKRNRKPTWKTVVDECEVGEEEKAVVLKMKSAEKVVVVNRRPVTVKELFDTGLLDGVPVFYMGCKKDSTSGLRGVIQDGGILCSCCICNGRRIIPPSQFEIHACNTYKRAAQYICLENGKSLLDLLRACRAVPLHGLEVAVQNFLCSPPEEKYFTCKSCRGCFPSSSVERVGLICQSCVEERKSENNSIKRVGKRVRSPKPVSFTSPSSTSELCNSSQTKRRWKKRAKSSKRNGTCSAFSKSASDPILFQKSLWKRKTKSYKLTVKLNTAPVTSTSLCPVTSTSTCLSPESKSQWKIAKKYQRLHKLIFEENGLLDGAKVAYYARGQKLLVGIKRGSGIVCGCCNTLVSPSQFEVHAGWASRRKPYAYIYTSDGMSLHXXXXFILKERKYTAKYNDDLCVVCWNGGNLLLCDGCPRSFHKECASVSSIPHGNWYCQICRNMFQRESLVADNANAVAAERVEGVGPIEQIARCIRIVKDTDIEMGGCVLCGCSDFSRSGFGPRTIIFCDQCEKEYHVGCLRDHKMAFLKELPEGIWICCDDCTRIHSILGNILARVPETLPESLLDVIKMKQEEIFLGLPNEIDVRWRLLNGKIASPQTRPFLLQAVSMFHECFDPIIDPVSGSDLIPAMVYGRSVQTQDFGGFYCALLMVNSCVVSVAMLRVFGRDVAELPLVATCYKNRGKGYFQTLFSCIERLLAFLNVKNFVLPAAEEAISIWTDKFGFSLMKPEQLSNYRKTFSQMMAFKGTIMLEKPVPSCRIVNTRS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00039 855 PANTHER AUTOIMMUNE REGULATOR 68 845 - -
Stsc120864g00039 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 636 IPR013083 -
Stsc120864g00039 855 SUPERFAMILY FYVE/PHD zinc finger 568 631 IPR011011 -
Stsc120864g00039 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 556 IPR013083 -
Stsc120864g00039 855 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 733 818 IPR016181 -
Stsc120864g00039 855 SUPERFAMILY FYVE/PHD zinc finger 472 532 IPR011011 -
Stsc120864g00039 855 ProSiteProfiles Zinc finger PHD-type profile. 488 533 IPR019787 -
Stsc120864g00039 855 SMART PHD_3 580 634 IPR001965 -
Stsc120864g00039 855 SMART PHD_3 490 531 IPR001965 -
Stsc120864g00039 855 ProSitePatterns Zinc finger PHD-type signature. 491 530 IPR019786 -
Stsc120864g00039 855 Pfam Tify domain binding domain 427 470 IPR032308 -
Stsc120864g00039 855 Pfam Tify domain binding domain 166 221 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00039 Stsc-Chr120864 170914 177941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00039 124 852 PHD Transcription Factor Family AT2G36720 49.732 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00039 - - ahf:112728915 1557.73