Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00022 ATGGCAGTTCCGGGAAGGCGCAACGGCATAAACTCAGATGACGAAGACAACAACCTCTTCGAAGAAGAAGGACTTGTCGAACCTGAATCCGACACACCTCCTCACCTCCGTGACCTCTCCGCCGCCGCGCAGCTCGGCAACCTCTCCGCCCTCCGCACTGCCCTAGATAACTTGCAAGGGAGTATCGATGAGCCGGTGGAGGATGGGGATACTGCTTTACATTTGACTTGTTTGTATGGCCATTTGGAATGTGCCCAGTTACTTCTAGATAGAGGAGCGAACTTGGAGGCCAAAGATGAAGATGGTGCGCTTCCTTTGCACGATGCTTGTGCAGGAGGTTATACAGAGATAGTCCAGCTGCTATTTAACCGAGCTGGTGATGCAGAGATCATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGACACCCCTCTTCATCATGCAGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTCATGGTGCTTCCCCCACGAAGCAAAACTTATATGGAAAGACCCCGGCAGAGTTACCAGATCAGGACACCAATGCTAGGAGGCTGTTGGAATCTACCACCACTTCCATGGAAACTTAG 606 0.5033 MAVPGRRNGINSDDEDNNLFEEEGLVEPESDTPPHLRDLSAAAQLGNLSALRTALDNLQGSIDEPVEDGDTALHLTCLYGHLECAQLLLDRGANLEAKDEDGALPLHDACAGGYTEIVQLLFNRAGDAEIIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKQNLYGKTPAELPDQDTNARRLLESTTTSMET 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat region circular profile. 101 130 - -
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Stsc120864g00022 201 PANTHER SOWAH (DROSOPHILA) HOMOLOG 34 195 - -
Stsc120864g00022 201 PRINTS Ankyrin repeat signature 69 84 IPR002110 GO:0005515
Stsc120864g00022 201 PRINTS Ankyrin repeat signature 157 171 IPR002110 GO:0005515
Stsc120864g00022 201 Pfam Ankyrin repeats (3 copies) 125 172 IPR002110 GO:0005515
Stsc120864g00022 201 Pfam Ankyrin repeats (3 copies) 40 124 IPR002110 GO:0005515
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Stsc120864g00022 201 SUPERFAMILY Ankyrin repeat 37 181 IPR036770 -
Stsc120864g00022 201 FunFam BRCA1-associated RING domain protein 1 33 200 - -
Stsc120864g00022 201 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Stsc120864g00022 201 SMART ANK_2a 101 130 IPR002110 GO:0005515
Stsc120864g00022 201 SMART ANK_2a 141 170 IPR002110 GO:0005515
Stsc120864g00022 201 SMART ANK_2a 68 97 IPR002110 GO:0005515
Stsc120864g00022 201 Gene3D - 33 201 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00022 Stsc-Chr120864 99166 104238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00022 61 187 Ion Channels AT2G25600 29.801 2.47e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00022 - - gmx:100527544 324.324