Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00021 ATGGAGATCCAATTAGAGGAACAACAACATCAAAATTTGGTCATCAAAGGCAAACGGAGCAAGCGTCCCCGGCCGCCTTCTCCATCGCCATCACCATCACCATCACCATCACCATCACCATCACCGCCGCGACCATCACTTGAATTTGAACCACCAATAATCACCAATAACAACAACAACATGATGCCACCACCAAGTAGTACTAATAGTACAACTACTACAATTACAACAACAACATTAGATGATGAAAACATTGCTTATAGTCTCATGCTATTGGCACAAGGACATCATCATCATAGTAAAAGATCATCACATCATCATCACATGTACCAATGCAAGACATGTAACAAATCATTCCCTTCATCTCAAGCACTTGGTGGACACAGAGCTAGCCACAAGAAATTATCATTATTATTACCAAATAACAAATCAAAGGGTAATAATAATAATAATAATATTAATAATTCTTATGATCATGGTACTGAAGAGCACTCCAACACAACAAGCACCATGCTCTCTTTGCAAGTATCATCATCAAATATCTCAATAACAAAAAGAAATGCTACTAATAATAATAGTGGAAAATCTAACAAGATACATGAGTGTTCAATTTGTGGTGCTGGATTCTCGTCAGGGCAAGCATTAGGGGGTCATATGAGAAGGCATAGAAACTTTGAGGCTGCTAAGATGGCTGCGACTGGTGGTGGAAACTTTATTATTGCTAGCTCATCACAATTATCATCATCATCACATGATGAAGGTAACAAGAACAAGAAACCAAGGAATCATGATTTTTTGAAGCTGGATTTGAATCTTCCAGCATCACCATCAGAAGATGATCTAAGAGAATCATCATCATCAAAGTTCCCATTTCATCAAACAAGGGAGAAAGTTATTGACTTCTCTTCTGCACATTCTTTGGTGGATTGCCATTACTGA 939 0.3802 MEIQLEEQQHQNLVIKGKRSKRPRPPSPSPSPSPSPSPSPSPPRPSLEFEPPIITNNNNNMMPPPSSTNSTTTTITTTTLDDENIAYSLMLLAQGHHHHSKRSSHHHHMYQCKTCNKSFPSSQALGGHRASHKKLSLLLPNNKSKGNNNNNNINNSYDHGTEEHSNTTSTMLSLQVSSSNISITKRNATNNNSGKSNKIHECSICGAGFSSGQALGGHMRRHRNFEAAKMAATGGGNFIIASSSQLSSSSHDEGNKNKKPRNHDFLKLDLNLPASPSEDDLRESSSSKFPFHQTREKVIDFSSAHSLVDCHY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 1 74 - -
Stsc120864g00021 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 132 IPR013087 -
Stsc120864g00021 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Stsc120864g00021 312 SMART c2h2final6 200 222 IPR013087 -
Stsc120864g00021 312 SMART c2h2final6 110 132 IPR013087 -
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 24 49 - -
Stsc120864g00021 312 Pfam C2H2-type zinc finger 200 223 - -
Stsc120864g00021 312 Pfam C2H2-type zinc finger 110 134 - -
Stsc120864g00021 312 PANTHER ZINC FINGER PROTEIN ZAT5 24 290 - -
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 139 172 - -
Stsc120864g00021 312 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Stsc120864g00021 312 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 252 266 - -
Stsc120864g00021 312 SUPERFAMILY beta-beta-alpha zinc fingers 109 222 IPR036236 -
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 51 74 - -
Stsc120864g00021 312 Gene3D Classic Zinc Finger 176 262 - -
Stsc120864g00021 312 MobiDBLite consensus disorder prediction 244 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00021 Stsc-Chr120864 97379 98317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00021 13 312 C2H2 Transcription Factor Family AT5G03510 36.000 7.23e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120864g00021 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00021 - - adu:107476344 241.121