Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00019 ATGTTCGAAAGAAGGTACATTGTGTTAATAATAACATATGTATTAAAATGCATTGTGGCTCATGGAACTTCAAAAATGGTGAATCTCACACTCACACTCCCAGGGCACCACCCAAACCCTGAAGCTCTTGTTACACAAGTTCATAGTAGGATTAATGCTTCAATAGCAAGAAGGGAGATGTTAGCAGCATCATCATCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGTCACAAAACAGACAAAGCCTAGCAGATTGTGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCCAGTTTTACATAGTAACCGATTCGTCGGACAACGATGCTGTAAACCCTAAACCCGGAACCCTAAGATACGCCGTGATCCAAACTGAGCCACTTTGGATAGTGTTTCCTACTAACATGATGATTAAGCTTTCACAAGAACTCATATTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTTCACATTGTTGGTAATGCTATGGTGCGATCAAGTCCAGAGCACTACGGATACCGCACCGAATCGGACGGTGACGGCATCTCCATATTCGGATCGCATGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCAACTGCCATTACTGTCTCCAACAACCACTTCTCTCATCACAATGACGTAATGCTATTGGGCCATAGTGACCACTACTTACCGGACTCAGCCATGCAGGTTACCATTGCCTTTAACCATTTTGGCGAGAAACTCGTCCAGCGCATGCCACGCTGCAGGCTAGGATACGTCCACATAGTCAACAACGACTACACTGCTTGGCAGATGTATGCGATCGGGGGCAGTGCGTCCCCTACTATTAATAGTCAGGGGAACCGGTTCACTGCTCCCGACGACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGCGAAGGCAAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGATGTGATGGTGAATGGAGCATTCTTTGTTCCATCTGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCTAAGTCTGCTGATCGAATTGCTTTGCTTACTATGTCTGCTGGAGTTCTTGGTGTTGCTAGGGACAATAACCTTGGCATGTGGACTAGAGGACCCAACGATGGTGGTAGTTATATTTCAACAAACGGTCCAGAATTCACTGATGAAATGTCAAAGACTACAATGCTGTTTCCACCTTCCCATACTTTCACATTTATATCTGTTCTTCTTACAATGTTGTGCTTGTTTTCTCACACAATTACTCCCCTAATAACATTACTACTATAA 1374 0.4541 MFERRYIVLIITYVLKCIVAHGTSKMVNLTLTLPGHHPNPEALVTQVHSRINASIARREMLAASSSSCLTGNPIDDCWKCDPNWSQNRQSLADCAIGFGQNAKGGKGGQFYIVTDSSDNDAVNPKPGTLRYAVIQTEPLWIVFPTNMMIKLSQELIFNSFKTIDGRGADVHIVGNAMVRSSPEHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDYTAWQMYAIGGSASPTINSQGNRFTAPDDSFAKQVTKRLDVGEGKWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRIALLTMSAGVLGVARDNNLGMWTRGPNDGGSYISTNGPEFTDEMSKTTMLFPPSHTFTFISVLLTMLCLFSHTITPLITLLL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00019 457 SMART amb_all 146 317 IPR002022 -
Stsc120864g00019 457 Pfam Pectate lyase 189 311 IPR002022 -
Stsc120864g00019 457 SUPERFAMILY Pectin lyase-like 72 375 IPR011050 -
Stsc120864g00019 457 PANTHER PECTATE LYASE 18-RELATED 174 389 IPR045032 GO:0030570
Stsc120864g00019 457 Gene3D - 71 387 IPR012334 -
Stsc120864g00019 457 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Stsc120864g00019 457 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Stsc120864g00019 457 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Stsc120864g00019 457 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Stsc120864g00019 457 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00019 Stsc-Chr120864 87250 90271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00019 1 420 Polysaccharide Lyase AT3G53190 66.519 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00019 K01728 - gmx:100815062 699.508