Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00013 ATGGTAAATAAACGAAAGAGAAGTGAGCACTACAAAACCCTACCTCCTTCTTCTATTAACTCGCCGCACACAAAAAACCCTAAGATCTCAGAGCCACTTCGCATTCCACTTCCAACAGATATGGTTGAGGTGAAGGCTATTGTTCCTGAATCTGTTCTCAAGAAGCAGAAGAGGGAAGAAGAGTGGGCTCTGAAGAAAAAGGAGGAGCAAGATGCTGCTAAGAAGAAGAGAGCTGAGAGCCGCAAGCTCATCTACGGCAGGGCTAAACAATATGCTAAAGAATACCAGGAGCAGGAAACCCAGCTGATCGAATTGAAGCGGGAAGCGAAGCTGAAAGGTGGATTCTATGTGGATCCAGAGGCTAAGCTATTGTTCATTGTCCGCATCCGTGGTATCAATGCCATGGACCCCAAGTCCAGGAAGATCTTGCAGCTTTTGAGGTTGAGACAGATCTTTAATGGTGTGTTCCTGAAGGTTAACAAGGCCACAGTGAACATGCTTCATAGGGTTGAGCCCTATGTTACATATGGATACCCAAATCTGAAGAGCGTACGAGAGCTCATTTACAAGAGGGGCTTTGGGAAGTTGGACAGGCAAAGAATTGCCCTGACTGACAACTCCATCATTGAGCAGGCGCTGGGTCAACATGGGATCATCTGTATTGAAGATCTCATTCACGAGATCATAACAGTTGGACCCCACTTCAAGGAAGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTCTAGGTGGCTTGAAAAAGAAGAGAAACCACTACGTGGAGGGTGGTGATGCGGGAAACAGGGAAAACTACATAAATGAGCTTATCAGAAGAATGAACTAG 849 0.4594 MVNKRKRSEHYKTLPPSSINSPHTKNPKISEPLRIPLPTDMVEVKAIVPESVLKKQKREEEWALKKKEEQDAAKKKRAESRKLIYGRAKQYAKEYQEQETQLIELKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGFGKLDRQRIALTDNSIIEQALGQHGIICIEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00013 282 MobiDBLite consensus disorder prediction 56 79 - -
Stsc120864g00013 282 SUPERFAMILY Ribosomal protein L30p/L7e 123 282 IPR036919 -
Stsc120864g00013 282 Gene3D - 227 282 IPR036919 -
Stsc120864g00013 282 Gene3D - 123 226 IPR036919 -
Stsc120864g00013 282 PANTHER 60S RIBOSOMAL PROTEIN L7 46 282 IPR039699 -
Stsc120864g00013 282 MobiDBLite consensus disorder prediction 13 27 - -
Stsc120864g00013 282 FunFam 60S ribosomal protein L7 228 282 - -
Stsc120864g00013 282 NCBIfam 60S ribosomal protein uL30 49 282 IPR005998 GO:0000463|GO:0003735|GO:0022625
Stsc120864g00013 282 Pfam Ribosomal L30 N-terminal domain 48 119 IPR012988 -
Stsc120864g00013 282 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120864g00013 282 FunFam 60S ribosomal protein L7 123 227 - -
Stsc120864g00013 282 ProSitePatterns Ribosomal protein L30 signature. 142 174 IPR018038 -
Stsc120864g00013 282 CDD Ribosomal_L7_archeal_euk 123 282 IPR035808 -
Stsc120864g00013 282 Pfam Ribosomal protein L30p/L7e 124 174 IPR016082 -
Stsc120864g00013 282 Coils Coil 88 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00013 Stsc-Chr120864 62890 65426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00013 42 282 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.817 1.36e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00013 K02937 - gmx:100813342 415.616