Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120864g00002 ATGCAAGGACTTGAGCTTGTTCCAGAAGCATCACAACCACCAACAACAGCAAGAGCAATGGAGGAAGAACAAAGAGGAGAACAATCCAAGGAGCAAGAAAAGATGGTGGAGAAGGCCACTTCAGAACCAAATAGAGATGGTGGTGCTGCTACTAGTACTAGTGGTGGTGGAGGAGGAGGAGAAAAAGGTGCAAGTGTTGAACCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATTCATTGGATTACATCCTAATGGGAATTGGAACAATTGGAGCAATGGTACATGGATGTTCATTGCCACTGTTCTTAAGGTTCTTTGCTGATCTTGTGAACTCTTTTGGTTCCAATGCCAATAATGTGGACAAGATGACCCAGGAAGTTGTCAAGTATGCATTTTACTTCCTTGTTGTTGGTGCTGCTATATGGGCATCATCATGGGCAGAGATTTCATGTTGGATGTGGACAGGTGAGAGGCAATCAACAAGGATGAGGATCAAGTATCTTGAAGCTGCTTTAGAACAAGACATTCAATTCTTTGACACTGAGGTTAGAACCTCAGACGTTGTTTCTGCAATCAACACTGATGCTGTCATGGTCCAAGATGCCATTAGTGAGAAGTTGGGTAATTTCATTCACTACTTTGGCACATTTATTTCTGGGTTTGCTGTGGGATTCAGTGCTGTGTGGCAATTAGCACTTGTCACTCTTGCTGTAGTTCCTATGATTGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTACTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGTTGAACAGACTGTTGTTCAAATCAGAGTGGTTTTGGCATTTGTTGGGGAGAATAGAGCACTGCAAGGTTACTCATCTGCATTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGCTATGCTCTTTTGCTTTGGTATGGTGGATATCTGGTTAGGCATCACAACACCAATGGAGGATTAGCCATTGCAACCATGTTTGCTGTTTGTATTGGTGGATTGGCTTTAGCCCAGTCTGCACCAAGCATAGCTGCATTTACAAAGGCCAGAGTAGCAGCTGCAAAAATTTACCGTGTGATCGATCACAAGCCGGCTATAGAGAGAAACAACGAATCCGGTGTGGAGTTAGATAGTGTCACAGGACTAGTGGAGCTGAAAAATGTAGACTTTTCATATCCATCTAGGCCAGATGTTAGGATTCTTAACAATTTCACCTTAAGTGTGCCTGCCGGCAAGACCATAGCCTTGGTGGGAAGCAGCGGCTCCGGAAAGAGCACCGTTGTGTCTCTCATAGAGAGATTCTATGACCCTTCATCAGGACAAGTTTTGTTAGATGGTAATGATGTTAAGATCTTGAAGCTAAAATGGTTGAGGCAGCAAATAGGACTAGTGAGCCAAGAACCAGCTTTGTTTGCGACGACAATTCGAGAAAACATACTCTTAGGAAGATCTGATGCTGACCAAGTTGAGATTGAAGAAGCTGCAAGGGTAGCCAATGCTCATTCTTTCATTATCAAACTTCCAGAAGGTTATGAAACACAGGTAGGTGAAAGGGGGTTGCAACTTTCAGGAGGGCAAAAGCAGAGAATTGCTATAGCAAGAGCAATGCTGAAGAACCCGGCAATTCTTCTCCTAGATGAGGCGACGAGTGCATTGGACTCTGAATCAGAAAAGCTTGTGCAAGAAGCACTTGATAGGTTTATGATTGGTAGAACAACACTTGTGATTGCACACCGCCTTTCCACGATCCGCAAAGCTGATCTTGTAGCAGTGCTTCAGCAAGGAAGTGTATCAGAAATTGGAACTCATGATGAGCTTTTCGCTAAAGGCGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAAGAGGCTGCACATGAAACTGCCATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCGAGTGCAAGAAACTCTGTAAGTTCACCCATTATTGCTCGGAATTCTTCTTACGGCCGGTCACCATACTCAAGAAGGCTATCTGACTTCTCCACATCGGATTTTAGTCTTTCCATTGATGCATCACATCCAAATTACAAGCTCGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTTTGGAGACTTGCAAAGATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCTATAGGTTCTGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCGAACCACAGACACATGATCCGAGAAATAGAAAAGTACTGCTACTTATTAATAGGACTTTCATCAGCAGCTCTTATCTTCAATACATTGCAGCACTTCTTCTGGGATATTGTTGGGGAAAACCTCACGAAACGAGTGAGGGAGAAAATGTTCAGTGCAGTGCTCAAGAACGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCTAGAATTGCAGCAAGGCTATCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCGGTAATTGTGCAGAACACTGCACTTATGTTGGTTGCTTGCACTGCAGGGTTTGTACTGCAGTGGCGCCTTGCTCTCGTCCTTGTAGCTGTCTTCCCCGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTTGAAGCTGCACATGCCAAGGCCACACAACTTGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCTGCCTTTAATTCGGAAAAGAAAATCGTGGGACTTTTCATGTCGAACCTTGAAATTCCGCTGAGGCGCTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGGATAGCACAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTTAAGCATGGAATATCTGACTTCTCTAAAACAATCAGAGTGTTTATGGTCCTCATGGTCTCGGCTAATGGTGCTGCTGAAACTTTAACCCTGGCTCCTGACTTCATCAAGGGTGGTAGAGCCATGAGGTCAGTCTTTGAACTCCTTGACCGCAGAACCGAAATTGAGCCGGATGATTCTGATGCTACCCCAGTTCCTGACCGTCTTCGCGGTGAAGTTGAGCTGAAGCATGTTGACTTCTCTTATCCTACTAGGCCGGATATGCCGGTTTTCCGTGACCTGAGCCTTCGTGCAAGGGCAGGTAAAACTCTTGCTCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCACTTATCCAGAGGTTCTATGATCCGTCATCCGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAACCTTAAGTCCCTAAGAAGGCACATTGCTGTGGTGCCTCAGGAACCATGCTTGTTTGCTACTACAATATATGAAAACATTGCTTATGGCCATGACTCGGCTACCGAAGCCGAGATCATCGAGGCTGCTACTCTTGCCAATGCACACAAGTTCATATCCGGTCTGCCTGAAGGATACAAAACATTTGTTGGGGAGAGAGGAGTTCAGCTATCAGGAGGACAAAAGCAAAGAATAGCCATTGCTAGAGCTTTTGTGAGGAAAGCTGAGCTCATGCTTCTCGACGAAGCAACAAGTGCGCTCGATGCAGAATCGGAGAGGTCCGTGCAGGAGGCTCTAGACCGAGCTTGCACCGGAAAAACAACTATCATAGTCGCCCACAGACTATCGACAATCAGGAATGCCAATCTCATTGCAGTGATTGATGATGGTAAAGTAGCAGAACACGGATCACATTCACAGCTGTTGAAGAACTACCCTGATGGAATCTATGCAAGGATGATTCAATTACAAAGATTCTCAAACAACCAAGTCATTGGTGTTGCCTCAAGTTCAAGCTCCTCTACAAGACCAAACGATGATCAAAGGGAAAGCTAG 3996 0.4487 MQGLELVPEASQPPTTARAMEEEQRGEQSKEQEKMVEKATSEPNRDGGAATSTSGGGGGGEKGASVEPVGFGELFRFADSLDYILMGIGTIGAMVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALEQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYFGTFISGFAVGFSAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSTKSQEALSQAGNIVEQTVVQIRVVLAFVGENRALQGYSSALRIAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHNTNGGLAIATMFAVCIGGLALAQSAPSIAAFTKARVAAAKIYRVIDHKPAIERNNESGVELDSVTGLVELKNVDFSYPSRPDVRILNNFTLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGNDVKILKLKWLRQQIGLVSQEPALFATTIRENILLGRSDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEAAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSIDASHPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALIFNTLQHFFWDIVGENLTKRVREKMFSAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFMSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDSDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPSSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACTGKTTIIVAHRLSTIRNANLIAVIDDGKVAEHGSHSQLLKNYPDGIYARMIQLQRFSNNQVIGVASSSSSSTRPNDDQRES 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120864g00002 1331 PANTHER ABC TRANSPORTER B FAMILY 56 792 IPR039421 -
Stsc120864g00002 1331 SMART AAA_5 437 623 IPR003593 GO:0016887
Stsc120864g00002 1331 SMART AAA_5 1092 1284 IPR003593 GO:0016887
Stsc120864g00002 1331 Gene3D - 1056 1312 IPR027417 -
Stsc120864g00002 1331 SUPERFAMILY ABC transporter transmembrane region 74 394 IPR036640 GO:0005524|GO:0016020
Stsc120864g00002 1331 MobiDBLite consensus disorder prediction 1 63 - -
Stsc120864g00002 1331 CDD ABC_6TM_Pgp_ABCB1_D2_like 731 1047 - -
Stsc120864g00002 1331 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120864g00002 1331 FunFam ABC transporter B family member 1 73 408 - -
Stsc120864g00002 1331 Pfam ABC transporter transmembrane region 87 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120864g00002 1331 Pfam ABC transporter transmembrane region 743 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120864g00002 1331 CDD ABC_6TM_Pgp_ABCB1_D1_like 86 383 - -
Stsc120864g00002 1331 FunFam ABC transporter B family member 1 721 1030 - -
Stsc120864g00002 1331 FunFam ABC transporter B family member 1 1055 1305 - -
Stsc120864g00002 1331 MobiDBLite consensus disorder prediction 20 41 - -
Stsc120864g00002 1331 Pfam ABC transporter 428 577 IPR003439 GO:0005524
Stsc120864g00002 1331 Gene3D - 408 673 IPR027417 -
Stsc120864g00002 1331 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1029 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120864g00002 1331 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 646 IPR003439 GO:0005524
Stsc120864g00002 1331 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Stsc120864g00002 1331 Gene3D ABC transporter type 1, transmembrane domain 133 1038 IPR036640 GO:0005524|GO:0016020
Stsc120864g00002 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 649 IPR027417 -
Stsc120864g00002 1331 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1065 1301 IPR003439 GO:0005524
Stsc120864g00002 1331 SUPERFAMILY ABC transporter transmembrane region 729 1049 IPR036640 GO:0005524|GO:0016020
Stsc120864g00002 1331 CDD ABC_MTABC3_MDL1_MDL2 1065 1304 - -
Stsc120864g00002 1331 CDD ABC_MTABC3_MDL1_MDL2 410 649 - -
Stsc120864g00002 1331 ProSitePatterns ABC transporters family signature. 1204 1218 IPR017871 GO:0005524|GO:0016887
Stsc120864g00002 1331 FunFam ABC transporter B family member 19 1031 1053 - -
Stsc120864g00002 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1056 1304 IPR027417 -
Stsc120864g00002 1331 Pfam ABC transporter 1084 1232 IPR003439 GO:0005524
Stsc120864g00002 1331 FunFam ABC transporter B family member 1 400 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120864g00002 Stsc-Chr120864 6625 12751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120864g00002 44 1326 Calmodulin-binding Proteins AT2G36910 87.773 0.0 2300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120864g00002 K05658 - gmx:100814667 2269.97