Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120863g00015 ATGGGGAAAAACGAATTTCTCACACCGAAAGCGATCGCCAATCGAATCAAAGCGAAAGGGCTGCAGAAGCTTAGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGAGACGAGAATGGGTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGCCAGATGCAGATTTTCGGCCAAAACCCTCATCGGATAGTGGAGGGTTATTCCGAGGAGTTTGAGAGTTCTTTCCTTGAGCACATGAAGCGCAGCCATCGGTTTAGCCGCATTGCTGCCACTGTGGTTTACAACGAGTACATCAATGACAGGCATCATGTTCATATGAACTCCACTCAATGGGCAACTCTTACTGAGTTTGTGAAGTACTTGGGTCGAACGGGGAAGTGTAAGGTTGAGGAAACCCCCAAGGGTTGGTTCATTACTTATATAGATAGAGATTCTGAGACCCTTTTCAAGGAGAGGATGAAGAATAAGAGGATCAAGGCGGATATGGTGGAGGAAGAGAAGCAAGAGAAGGAGATCATGAAACAGATTGAAAAGGCTGCGCAACTGATGCAACGGCCAGATACTACTGAGACTGATCAGGCTTCAGAGGTTGAGGCTCCGAGGGAACTAAACGTGGAAGATGGAGTTAAGATAGGGTTTTCTCTTGGGGCATCAGCTAAGCCTGTGATCAAAGAGAAACCTGAGACATCGAAGAAGGTTGTGTTTGATGAGGTTGAGGAAGACAAATACGAGGAAAGGAATCCAGGAAACAGTTTGAAGAGGAAAGAGAGTGGCGGTGGAGGAAAATCAACTTTGGAAGAATTGATTAGGGAAGAAGAGAAGAAAAAGGAGAAAATCAACAGGAAGGACTATTGGTTGCATGAGGGAATCATTGTTAAGGTGATGAGCAAGGCCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGTGTGGTGAGAAAGGTCATTGACAAATATGTTGGGGAAATTGAAATGCTCGAAAGCAAGCATGTGCTTAGAGTTGATCAGGAAGAGCTTGAAACTGTGATTCCACAGGTTGGGGGCCGTGTAAAAATTGTGAACGGTGCATATCGCGGATCAATTGCGAAGCTTTTAGGGGTAGATACAGATCATTTTTGTGCAAAGGTGCAGATAGAGAAAGGTGCCTATGATGGTAGGGTACTCAAAGCTGTGGAGTATGAAGACATTTGTAAAATAGCACAATGA 1206 0.4561 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRIAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVEEEKQEKEIMKQIEKAAQLMQRPDTTETDQASEVEAPRELNVEDGVKIGFSLGASAKPVIKEKPETSKKVVFDEVEEDKYEERNPGNSLKRKESGGGGKSTLEELIREEEKKKEKINRKDYWLHEGIIVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDHFCAKVQIEKGAYDGRVLKAVEYEDICKIAQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120863g00015 401 FunFam DNA/RNA-binding protein KIN17, putative 344 400 - -
Stsc120863g00015 401 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Stsc120863g00015 401 Gene3D - 344 400 IPR014722 -
Stsc120863g00015 401 Gene3D - 290 343 - -
Stsc120863g00015 401 Gene3D - 60 160 IPR038254 -
Stsc120863g00015 401 Coils Coil 263 283 - -
Stsc120863g00015 401 MobiDBLite consensus disorder prediction 181 200 - -
Stsc120863g00015 401 CDD KOW_KIN17 346 399 IPR041995 -
Stsc120863g00015 401 FunFam DNA/RNA-binding protein kin17-like 290 343 - -
Stsc120863g00015 401 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
Stsc120863g00015 401 MobiDBLite consensus disorder prediction 240 266 - -
Stsc120863g00015 401 SMART Kin17_mid_2 52 178 IPR019447 -
Stsc120863g00015 401 Coils Coil 154 186 - -
Stsc120863g00015 401 Pfam KN17 SH3-like C-terminal domain 282 335 IPR041330 -
Stsc120863g00015 401 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Stsc120863g00015 401 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120863g00015 Stsc-Chr120863 76748 78586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120863g00015 1 400 C2H2 Transcription Factor Family AT1G55460 70.983 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120863g00015 K13102 - gmx:100785931 699.893