Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120862g00004 ATGTCGGATGCAATGGGAAACGCAAGGTACTCTCTGCTGAAGGATTTAAGAGCTGAAATTGAAGTGAAGGACGGAACTTTTTCTCTATGCTTTTGGGTGTATTTGACCAACTCAACTATGTTTCCTGCTACCATTATTCAGCAGGTTTGCTCTGATGTTTCCCAAAGTGCCCCTTTCCTTGTTATAAATGATCATAAAAGAATCAATCTTCTTCCACTTCTTCTCTTACATGAAGAAGCTCCTCATACTGGCAATATCAATTCCTTGACAGAAGTTGCATATGCAACTGTAGATTTTGAGTTTCCATTGGAAAATTGGGTTCACATTGGATGTGAGGTTTGTTCTAATCACATGAAACTACAGATTAATGGAGAGATTGTTGGAGAAAAACTGCTGTCTCCTTTATCAAATATGGAATCCAATTCAAATGATTTAAGGAAAATAGTTTTGGCAAATATTGGTGGAGATGGAAATAATTCACAGGGTTATGTGCACAATTTTGAAATCTTCCCTTCTGTTTCATCTATTAAAGATCACCATTTGAAGGATCCTCCTCTAAAGTTATCAATTGATGAGTCGTCTGCCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGACGTTGTTCTCTCAAATGTTTTTGGACAACTTGTTGATAAGGAGAATGAGGTTTATGCTTCACTTTTGTATGCTGACACACAGACACCAGTGGAGAATACAACTGATGAAGAAGCACCCATCTTGGCTAGCTATGATGGAATTGAATTTCCGTCTTATGAAAGACCGAGTAAACTTTTACTGGGCCGTGCTTCTTTTAAGCTGAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAAATTCTGTATTCCAAAATTAGGGAGTTATCCTTTTCTTGAGGCACTCTCCCGTCCAATTCGATGCATATCTAGGAGTCGTAATACACGATTGTCTACCCTGGTGTGGAAAAGGTCATCTGGTCTTCCTACGCATAATTTAATGCAATCTTCAGCAATGGATGATGCATCCTTTGAAAATCAACATCCTGTTCGTGAAGCAAAATCTAGTCCATTAATGAAGCGATTCAGATTTGGACATGACAAGATATCTGTATCAGTGAAGGCTGAAACCAGCTTAGAGCAACCTGACGAGGAATGCAATTCTCATGCCTGGACTACTAATCAGGTTGAGAATGGTACACCTGCTAACGATGAGGTATATGACTCTCTGTCTGATTCAGAGAGTATAGGGGAGAGAAATTCGCCTTCAAATAATGTGGCAAGTAGAAGATATCCAATATCTGACATGACTGTTTTTAAGTACTGCTTGGCAAGCTTGACTGAGAGATCACTGATGCTTAAGGAGATTGCTTCCTTGGCTTCAAAGAAAGAAATTTCAGAGTTGGCCCATCATGTGTCACTTTATTCAGGATGTTCACACCATGGAAATCAAATATTAATTGCCAAAAGATTGGTAGAAGATGGAACTAATCTTTGGAAGGTGATGTCTCCAAACAACAACCACATTCCTTGGGAGAGTGCAGTTTATGAGATTGAAGAGCAATTCATGAAGATTGCTTCTTGCAGTTCGCGATCTCTCTCACATCAGGACCTAGAGCTTCTAAGAGTTATTGCTGGATGTCATGAGTACCTAGCCCAAGAAAACTTTGAGAAGTTATGGTGCTGGTTGTACCCTGTAGCTTACATAATATCAAAGGAGTGGATAAACCCTATCTGGAATTCCACATCACCTAAGTGGATAGAAGGATTCATAACTAAGGAGGAAGCAGAAGCCTCGCTTCAAGGTCCCACAGGACTTCAAGAACCAGGTACATTTGTATTGAGATTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCAGGTAGCCTAATTGTCACATATGTTGGCAATGATTACAGAGTTCACCACAGGCTACTTTCGTTGGATCGTGTTTATGGCTCTGGTGATAAAGGAATAGACATGAAGCCACTCCAAGACATGCTACTGGCCGAACCTGAGCTGACTCGATTAGGAAGGATAATACGAAGCCATTAG 2112 0.4062 MSDAMGNARYSLLKDLRAEIEVKDGTFSLCFWVYLTNSTMFPATIIQQVCSDVSQSAPFLVINDHKRINLLPLLLLHEEAPHTGNINSLTEVAYATVDFEFPLENWVHIGCEVCSNHMKLQINGEIVGEKLLSPLSNMESNSNDLRKIVLANIGGDGNNSQGYVHNFEIFPSVSSIKDHHLKDPPLKLSIDESSASEIEEESDGVWSIVGGKASCRRNFSLDVVLSNVFGQLVDKENEVYASLLYADTQTPVENTTDEEAPILASYDGIEFPSYERPSKLLLGRASFKLKISQLSSKCDNRLFLIKFCIPKLGSYPFLEALSRPIRCISRSRNTRLSTLVWKRSSGLPTHNLMQSSAMDDASFENQHPVREAKSSPLMKRFRFGHDKISVSVKAETSLEQPDEECNSHAWTTNQVENGTPANDEVYDSLSDSESIGERNSPSNNVASRRYPISDMTVFKYCLASLTERSLMLKEIASLASKKEISELAHHVSLYSGCSHHGNQILIAKRLVEDGTNLWKVMSPNNNHIPWESAVYEIEEQFMKIASCSSRSLSHQDLELLRVIAGCHEYLAQENFEKLWCWLYPVAYIISKEWINPIWNSTSPKWIEGFITKEEAEASLQGPTGLQEPGTFVLRFPTSRSWPHPDAGSLIVTYVGNDYRVHHRLLSLDRVYGSGDKGIDMKPLQDMLLAEPELTRLGRIIRSH 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120862g00004 703 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 173 IPR013320 -
Stsc120862g00004 703 Gene3D SH2 domain 591 701 IPR036860 -
Stsc120862g00004 703 CDD SH2_SHA 594 703 - -
Stsc120862g00004 703 SUPERFAMILY SH2 domain 599 686 IPR036860 -
Stsc120862g00004 703 MobiDBLite consensus disorder prediction 410 447 - -
Stsc120862g00004 703 ProSiteProfiles Src homology 2 (SH2) domain profile. 605 703 IPR000980 -
Stsc120862g00004 703 FunFam SH2 domain protein B 591 703 - -
Stsc120862g00004 703 Gene3D - 5 176 - -
Stsc120862g00004 703 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 24 693 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120862g00004 Stsc-Chr120862 31489 42489 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Stsc120862g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120862g00004 - - gmx:100803169 1122.46