Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120861g00016 ATGGAGAAGTATCTCAAGGATTTCGAATTGGAACCCAAGGATCGTTCAATCGAAGCGCTTCGTAGATGGAGATCTGCGGTCTCAGCCTGGGTCGTCAAGAACCGCCTCAGAAGGTTCCGCAATGTTGCAGATCTTGTTAAACTAAAACTCGCCGAGGAGAAGAAGAAGAAACTGCAGCATCAACTACGGAGTATTCGGGTTGCTGTTTATGTTCATCAGGCAGCAGATCTTTTAAAGAATGCTATTGGTTCAGTAGCTGAATACAAGATATCGGAAAACACAAGAAAATCTGGTTTCAGAATTGATCCAGATGATATTGCAACGCTTGTTTCTGCCCATGATCTAAAGAACTTCAAAAAGTTTGGCGGAGCTGAAGGGATTGCGAGGAAACTCTCAGTCTCCTTGGATGATGGTGTTAGCAAAGATAGTATAGATAACAGGCAACAGATTTATGGACTTAACCGTTACACGGAGAAGCCTTCGAAATCTTTCTTGATGTTTGTTTGGGAGGCATTGCATGACTTAACACTAATCATTCTCATGGTTTGTGCTCTAGTTTCTATAGGTATAGGGCTTCCCACTGAAGGATGGCCAAAGGGTGTTTATGATGGTCTTGGTATCATACTTAGTGTGTTTTTGGTTGTTACTGTTACTGCTATTAGTGACTACCAGCAATCCTTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTCCAGGTGACTAGGGATGGTAAGAGACAGAAGGTTTCGATTTTTGATTTGGTAGTAGGAGATGTTGTCCATTTGTCAACCGGTGATCAAGTTCCGGCTGACGGCGTTTTTGTAACAGGGTACTCATTACTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCAGTAAATGTAGATGAACAAAAACCTTTTCTTCTTGCTGGAACTAAAGTGCAGGATGGTCAAGGGAAGATGATAGTTACCACTGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTAAATGAGGGAGGTGAGGAGGAGACTCCATTGCAAGTGAAATTGCACGGCGTTGCTACGATTATTGGTAAAATCGGTTTGGTTTTTTCCGTGCTGACATTTCTGGTGTTGACAATAAGGTTTCTTGTTGAGAAAGCAGTTTCTGGTGACTTTGGTAGTTGGTCTATGAATGATGCAATGAAGCTGTTGGATTACTTTGCCATTGCTGTGACCATAATAGTTGTTGCAATTCCAGAAGGATTACCATTGGCTGTAACACTAAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTGAGGCATCTTTCGGCATGCGAGACTATGGGTTCAGCAAGTTGCATTTGCACAGATAAGACAGGAACATTAACCACTAACCATATGGTTGTGAACAAGATCTGGATATGCGAAAAAGAGGCAGAGATCAAAGGTAATGAGAGTGCAGAGAAGCTGAAAACAGAGATACCTGAGGAAGTAATGAGCATCCTTTTCCAGGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGATAAAACAGGTAAAAAAACAATATTGGGAACACCAACAGAATCAGCATTGTTAGAATTTGGTTTGCTAACAGGTGGTGATTTCGATGCACAGCGCAGTACCTATAAGATAATTAAGGTTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGAGTCTTCCTGATGGGGGGGTCAGAGCTTTCTGCAAAGGAGCATCAGAAATAATCCTAAGAATGTGTGACAAAATTATTGATTGTAATGGAAATGCTGTTGATCTTCCTGAAGAACAGGCAAATAAAGTTAATGATGTCATAAATGGTTTTGCCTCCGAAGCTCTGAGAACTCTTTGTTTGGCTGTTAAAGATATAGATGCAACAGAAGGGGAAAACAGTATCCCTGAAAATGGCTATACTCTGATAGCAATTGTAGGAATCAAGGATCCCGTGCGCCCTGGGGTCAGAGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACCGTCCGTATGGTCACGGGTGACAACATAAATACAGCTAGGGCCATAGCTAAAGAATGTGGTATACTCACCGAGGGTGGTGTGGCCGTAGAAGGACCAGAGTTTCGAAACTTGTCACCAGAGCAAATGAAGGATATCATACCAAAAATTCAGGTAATGGCACGTTCACTACCGCTTGACAAGCACACCTTAGTATCCAATTTGAGGACTATGTTTGGTGAGGTTGTAGCTGTAACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCAAAAGAAAATGCTGATGTGATTATATTGGATGATAACTTCACAACTATTGTCAACGTGGCCAAATGGGGACGTGCCATATACATAAACATACAAAAATTTGTGCAGTTTCAGCTAACTGTGAATATTGTTGCTCTGGTTATCAACTTTGTTTCTGCATGCATCACTGGATCTGCACCACTCACAGCTGTTCAGTTGCTTTGGGTGAATTTGATTATGGACACATTGGGTGCATTGGCTCTGGCTACTGAGCCTCCCAATGAAGGACTAATGGAAAGACCCCCAGTTGGAAGAAAAGCAAGTTTTATCACCAAACCAATGTGGAGGAACATCTTCGGTCAGAGTTTGTATCAATTGATTGTCCTTGCCGTTCTCAATTTTGATGGGAAGAGGCTACTGGGACTTACTGGTTCAGATGCAACTCAAGTGCTCAACACTTTGATCTTCAACTCCTTTGTATTTTGCCAGGTATTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAATATATTCAGAGGCATGTTCGACAGCAAGATATTCTTCGCCGTGATTTTCTCCACGGTGGCATTTCAAGCGATCATAGTTGAGTTCCTGGGAACCTTCGCGAGCACGGGAATATGTTTAACCAATAACATGACTTCTCCAGTCATCAAGGGTAGTGGAGAACTGGAGATGGTGGTCCATTGGCCCTCATGA 3045 0.4207 MEKYLKDFELEPKDRSIEALRRWRSAVSAWVVKNRLRRFRNVADLVKLKLAEEKKKKLQHQLRSIRVAVYVHQAADLLKNAIGSVAEYKISENTRKSGFRIDPDDIATLVSAHDLKNFKKFGGAEGIARKLSVSLDDGVSKDSIDNRQQIYGLNRYTEKPSKSFLMFVWEALHDLTLIILMVCALVSIGIGLPTEGWPKGVYDGLGIILSVFLVVTVTAISDYQQSLQFRDLDKEKKKIFVQVTRDGKRQKVSIFDLVVGDVVHLSTGDQVPADGVFVTGYSLLIDESSLSGESEPVNVDEQKPFLLAGTKVQDGQGKMIVTTVGMRTEWGKLMETLNEGGEEETPLQVKLHGVATIIGKIGLVFSVLTFLVLTIRFLVEKAVSGDFGSWSMNDAMKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKEAEIKGNESAEKLKTEIPEEVMSILFQAIFQNTSSEVVKDKTGKKTILGTPTESALLEFGLLTGGDFDAQRSTYKIIKVEPFNSVRKKMSVLVSLPDGGVRAFCKGASEIILRMCDKIIDCNGNAVDLPEEQANKVNDVINGFASEALRTLCLAVKDIDATEGENSIPENGYTLIAIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTARAIAKECGILTEGGVAVEGPEFRNLSPEQMKDIIPKIQVMARSLPLDKHTLVSNLRTMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIILDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNEGLMERPPVGRKASFITKPMWRNIFGQSLYQLIVLAVLNFDGKRLLGLTGSDATQVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFDSKIFFAVIFSTVAFQAIIVEFLGTFASTGICLTNNMTSPVIKGSGELEMVVHWPS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120861g00016 1014 CDD P-type_ATPase_Ca_PMCA-like 144 889 - -
Stsc120861g00016 1014 FunFam Calcium-transporting ATPase 215 338 - -
Stsc120861g00016 1014 Pfam Cation transporting ATPase, C-terminus 841 987 IPR006068 -
Stsc120861g00016 1014 Gene3D - 15 80 - -
Stsc120861g00016 1014 NCBIfam HAD-IC family P-type ATPase 549 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 NCBIfam HAD-IC family P-type ATPase 207 377 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 NCBIfam HAD-IC family P-type ATPase 721 844 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 NCBIfam HAD-IC family P-type ATPase 392 479 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 PANTHER CATION TRANSPORTING ATPASE 91 987 - -
Stsc120861g00016 1014 Coils Coil 48 68 - -
Stsc120861g00016 1014 Gene3D - 170 979 - -
Stsc120861g00016 1014 Gene3D - 452 801 IPR023214 -
Stsc120861g00016 1014 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120861g00016 1014 Pfam Cation transport ATPase (P-type) 511 595 - -
Stsc120861g00016 1014 Gene3D - 138 338 - -
Stsc120861g00016 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 47 IPR024750 GO:0005516
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 286 300 - -
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Stsc120861g00016 1014 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Stsc120861g00016 1014 Gene3D - 465 660 IPR023299 GO:0000166
Stsc120861g00016 1014 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 994 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc120861g00016 1014 SFLD p-type atpase 437 809 IPR044492 -
Stsc120861g00016 1014 Pfam E1-E2 ATPase 240 433 - -
Stsc120861g00016 1014 SUPERFAMILY Calcium ATPase, transduction domain A 240 336 IPR008250 -
Stsc120861g00016 1014 FunFam Calcium-transporting ATPase 653 801 - -
Stsc120861g00016 1014 SUPERFAMILY HAD-like 454 861 IPR036412 -
Stsc120861g00016 1014 FunFam Calcium-transporting ATPase 773 1000 - -
Stsc120861g00016 1014 SMART Cation_ATPase_N_a_2 120 192 IPR004014 -
Stsc120861g00016 1014 SFLD Haloacid Dehalogenase 437 809 - -
Stsc120861g00016 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Stsc120861g00016 1014 FunFam Calcium-transporting ATPase 465 660 - -
Stsc120861g00016 1014 Pfam Cation transporter/ATPase, N-terminus 123 187 IPR004014 -
Stsc120861g00016 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 461 665 IPR023299 GO:0000166
Stsc120861g00016 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 984 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120861g00016 Stsc-Chr120861 187186 201339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120861g00016 65 987 Primary Pumps ATPases AT3G57330 73.485 0.0 1400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120861g00016 K01537 - gmx:100785768 1577.38