Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120861g00013 ATGACGGAGTTTGTTTCAGGAGTAGCCACAGTACTCTTGGACAAGTTAGCGACTAAAGCATACCAAGAGATTGCTCTGGCATGCGGTCTCAATGGAGAGGTGGCAAAGTTTCAAAGCAAAATGAAGCTCATCAATTCGTATCTCATGGATGCTGAGGAAAAGCAGGCAGAAAAGAGCAGCATAGTTGAGTGGTTGAAGCAACTCAGAGACATATTTGATGATGCCATCGACATATTGGATGAAATAGAGTACGAGGCGAAACGAAAAGAAGTGATCCAGATGTATGGAAGCACTTGCTCCAAGGTACGGCGGTTCTTCTCATGCTCTAGTAATCCACTTAGATTTCGCATCAAAATGGCTCACAAAATTAGAGATGTCAAACAAAGAATCGATGAGAAAGTTAGAGAAGGAGCAGATTTGGGTATAGCCGAACATGTCAGTGCTTCAACTTCTAGAAAAGATTCATCATGGAGGGAAACTTCTTCTTTTGTTCCTCCTCGTGTGACTGGTAGAATTGAAGAGAAGCAGAACCTTATAGATTTATTGGTGGAATTACAAGCACCACCAAAATCTAAGTCACAACATGAGAACAAAATTGATGTGATTCCCATTGTTGGGATTGGAGGGTTGGGGAAGACTACACTTGCCCAAATGGTGTATCATGATGACATAGTGAAGGGCCACTTTGACTTGCAAATGTGGGTGTGCGTGTCTGATGATGATCGTGATTTTGATGTTAAGAGGGTCATACAACAAATTGTTAAGGCTGCCCCTGCTGGAGATACAAGAGTTGATCAAAACTCTAGCCTGGATGAGCTTCTGACTTTGCTCAAACAAAGATTACATGAAAAGAGATTTTTGCTCGTGTTAGATGACATCTGGAATGAAGATCCCATGAAATGGGATGCATTGAGAGGTCACCTGGAGAGTGCATGTAGTGTCATGAATTTAAAAGGTAGCAAAATCATAGTAACCACTCGAAGAAACACTGTTGCTTCCATTGTGGGGACTAAGCCTCCAATTCTGTTGAGTGGACTTCCTCCCAAGGAATGTTGGGGACTGTTTGTTAAATGTGCATTTCAAGAAGAGAAGGAAGCAGAGCAGTATCCAAGGCTTCAGGAAATCGGGGAGGCTATTCTTGAAAAGTGCAAAGGGGTGCCATTAGCAATAACAACTTTAGGTTGCTTGCTTAGATCAAAGCAATGTGACGAACATGAGTGGAAAAAAATCAGAGATAGCGAGATATGGAAACTAGATGCAAAAGATGATGGCATTTTGCCGTCGTTAAGACTAAGCTATAATCACCTGCCACAAAGAGTAAAGCAATGTTTTTCACTGTGTTCTCTTTATCCCAAGGATTATACTTACCAAGCTAATCAATTGATTATGCTTTGGATGGCACATGGACTTCTTCAACCCATAAACGAGAAGCAAGACTCAGAACAAATTGGGGAATCATATATTAGGATTCTTCTTTCGGCATCTTTCCTTCAACTTGATGATGATGATGATATTCCAATTCAAGATGCAATAGGGTTATATGGGCTCAAAATGCATGATCTTATACATGATCTTGCTATGTCAACAATGAAGAAGTCAAATAAGACTCGAACTATTATTTCAAGCAAGACACAACATGGATCATCAGTGGAATGGACATCTAATGAATTCAAGCATCTAAAGGTATTGGATTTAGATAGCACAAAACTTGAGTTCCTTCCTGATGATTGCTTTGTCAAGGTGAAGTATTTGAGATGTCTTAGACTATCTGAGGAAAATATGCTTGAAAAACTGCCCAGTTCAATTTGTAAACTCCATATTCTACAGAGTTTAGATCTTTCTGGATGTAACAACCTCTTGGAGCTTCCCAAAAGCATGAGAAATCTTGTGAGCCTCCGATATTTATTTCTGTCGTCGTTCAGTGGTACAAGTTTGTCATTCATGGATACAGGCAACTTTCAACAACTTCAATGTTTACTTATTATGGATTGCGAGAACTTAGTGTCTTTGCCAAGTGCTTTGGGTCATCTGACTGTTTTAAAGAAATTGATCATTGGTGGGTGTGAAGAGCTAGTTAATTTTGAGGATGAAGAGGATGAAGGAAAGCAGCATGATGTGATCGTCCATGATTTGAAACTTGAAATATTTATGATTTACGAATCACCCAAGTTGAAAGCTTTACCAAAATGGCTTAAAAGATCTGTTAAAACATTGCGATTCATGGGTATTATTGATACAATGATAGAAGCATTGCCAGAATGGTTGCCGGGTGCAACTACTCTTGAGCAACTTTATATCATTAGTTGCAAACGCCTGTCATCTCTACCTGATAACATGGAACAACTTCACAACCTTATCCACTTATACATAGAAGATTGTCCCCAGTTGATTGAAAGGTGCAAAGAGGACTCAGGCCCAGATTGGCATAAAATTGCTCATATTCCACGCCGTCAGTCTCGTAGTTCAACCTTTAGAGACGAAGCATCTGCTTATTATGTTGTAGTACAAATTTCGACTCTCCACCAATAA 2529 0.3978 MTEFVSGVATVLLDKLATKAYQEIALACGLNGEVAKFQSKMKLINSYLMDAEEKQAEKSSIVEWLKQLRDIFDDAIDILDEIEYEAKRKEVIQMYGSTCSKVRRFFSCSSNPLRFRIKMAHKIRDVKQRIDEKVREGADLGIAEHVSASTSRKDSSWRETSSFVPPRVTGRIEEKQNLIDLLVELQAPPKSKSQHENKIDVIPIVGIGGLGKTTLAQMVYHDDIVKGHFDLQMWVCVSDDDRDFDVKRVIQQIVKAAPAGDTRVDQNSSLDELLTLLKQRLHEKRFLLVLDDIWNEDPMKWDALRGHLESACSVMNLKGSKIIVTTRRNTVASIVGTKPPILLSGLPPKECWGLFVKCAFQEEKEAEQYPRLQEIGEAILEKCKGVPLAITTLGCLLRSKQCDEHEWKKIRDSEIWKLDAKDDGILPSLRLSYNHLPQRVKQCFSLCSLYPKDYTYQANQLIMLWMAHGLLQPINEKQDSEQIGESYIRILLSASFLQLDDDDDIPIQDAIGLYGLKMHDLIHDLAMSTMKKSNKTRTIISSKTQHGSSVEWTSNEFKHLKVLDLDSTKLEFLPDDCFVKVKYLRCLRLSEENMLEKLPSSICKLHILQSLDLSGCNNLLELPKSMRNLVSLRYLFLSSFSGTSLSFMDTGNFQQLQCLLIMDCENLVSLPSALGHLTVLKKLIIGGCEELVNFEDEEDEGKQHDVIVHDLKLEIFMIYESPKLKALPKWLKRSVKTLRFMGIIDTMIEALPEWLPGATTLEQLYIISCKRLSSLPDNMEQLHNLIHLYIEDCPQLIERCKEDSGPDWHKIAHIPRRQSRSSTFRDEASAYYVVVQISTLHQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120861g00013 842 Gene3D - 9 124 - -
Stsc120861g00013 842 SUPERFAMILY L domain-like 548 796 - -
Stsc120861g00013 842 PANTHER DISEASE RESISTANCE PROTEIN RP 58 791 IPR044974 GO:0006952
Stsc120861g00013 842 Pfam Leucine rich repeat 559 618 IPR001611 GO:0005515
Stsc120861g00013 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 447 IPR027417 -
Stsc120861g00013 842 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Stsc120861g00013 842 Gene3D Ribonuclease Inhibitor 525 810 IPR032675 -
Stsc120861g00013 842 Pfam Rx N-terminal domain 10 100 IPR041118 -
Stsc120861g00013 842 Gene3D - 433 524 IPR036388 -
Stsc120861g00013 842 Gene3D - 154 339 IPR027417 -
Stsc120861g00013 842 PRINTS Disease resistance protein signature 603 619 - -
Stsc120861g00013 842 PRINTS Disease resistance protein signature 280 294 - -
Stsc120861g00013 842 PRINTS Disease resistance protein signature 383 397 - -
Stsc120861g00013 842 PRINTS Disease resistance protein signature 201 216 - -
Stsc120861g00013 842 Gene3D - 346 432 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120861g00013 Stsc-Chr120861 144632 148757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120861g00013 199 796 WRKY Transcription Factor Family AT5G45050 22.504 5.57e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120861g00013 - - adu:107472938 848.195