Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120860g00031 ATGAGCAAGAAAATTGTGACCTGCAAAGTTCTCAAACCTGGTGTTGGTGTTGGTGATACTCTTCATGCAACAACACCAGCCAAGGTTATTCGAGTTTCTGTGATGGATCCATACATCACTGATTCTTCTAGTGACGAGGAGGAATATCAACAACATCAAGGGCGAACCAAAGTGAAGCAAATTGTAAATGAGATAAGGATTTTGTATCCGCCATTTCACAACATCACCAAGATACAAAGGCCTAAACAACAACAACAACCGAACAAGGGGAAAAAAGTGGTCGTGGCTGCCCTGAAAGCTCCTTCTTCTTCTTGTTCTCAAGAGGGTAGGAAGCTACGCGGGGTTAGGCAAAGACCATGGGGAAGATGGGCTGCAGAGATTAGAGACCCTGTGAAGCGTAGCAGATTGTGGTTAGGAACCTATGACACTGCTGAAGAAGCCGCCATGGTTTATGATAGAGAAGCCATTCGCCTTCGAGGCCCTCATGCTCAAACTAATTTCCTCAAGCCTCCAAAGATGGAAGACCATGAAGAAGGTTTTGATTGCAACTTTTTCAGGGAGACGGGGAATAATTCAGTTAGAGAGTGTCGTCATGATCTGCCTTCTCCTACTTCTCCTACTTCTCCCACTTCTGTTCTTGTATTTGAGTCCGATAGATCTCGAAGTAAGGTTTCAGAAGAGCAAAGAAAGTTTAAAGATGAATCTCCTTCCAAATTTCAGGATGCATCTTTTTTAGATTCAGCTTCTATGGAGGATTTTTCTTTATCAGATTTTGAGATTCCTCCCCCAATATTTCTTGATGAAACTTGCCTACCCCATTTTGTTTTTAGTGACAACAATTTTGGTGATGCAACAATTGATCATGCTATTGAATTATGTAACTTGGATTTAGATGATTACTTTTGTAATCACACACCAAATTGA 924 0.4145 MSKKIVTCKVLKPGVGVGDTLHATTPAKVIRVSVMDPYITDSSSDEEEYQQHQGRTKVKQIVNEIRILYPPFHNITKIQRPKQQQQPNKGKKVVVAALKAPSSSCSQEGRKLRGVRQRPWGRWAAEIRDPVKRSRLWLGTYDTAEEAAMVYDREAIRLRGPHAQTNFLKPPKMEDHEEGFDCNFFRETGNNSVRECRHDLPSPTSPTSPTSVLVFESDRSRSKVSEEQRKFKDESPSKFQDASFLDSASMEDFSLSDFEIPPPIFLDETCLPHFVFSDNNFGDATIDHAIELCNLDLDDYFCNHTPN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120860g00031 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 225 - -
Stsc120860g00031 307 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 MobiDBLite consensus disorder prediction 219 237 - -
Stsc120860g00031 307 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 MobiDBLite consensus disorder prediction 197 237 - -
Stsc120860g00031 307 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Stsc120860g00031 307 FunFam Ethylene-responsive transcription factor 2 111 169 - -
Stsc120860g00031 307 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Stsc120860g00031 307 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Stsc120860g00031 307 MobiDBLite consensus disorder prediction 197 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120860g00031 Stsc-Chr120860 164606 165529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120860g00031 27 217 AP2-EREBP Transcription Factor Family AT4G27950 42.857 1.60e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120860g00031 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120860g00031 - - adu:107491972 394.815