Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120860g00008 ATGGCGAAGAGAGAGAGAGGAGTTTCCGCATCTGCGGCGGACGCTGCTGCCGGAAAAGCGGCGGAATTGAAGGAGAAGTTGAAGGAACTCGTCAAGGCCATCGTCGGCCACGACGACTACACCACGCGCGACGCCGAAGACGCCATCGCCACTCTATCGAGTCTTAGGGATTTGAAGAGAGCATCGGCTTCATCCATCGATGACCTAAGCTTCCCCGTTCCTCCCGAATTTCGATGCCCCATTTCCACCGAATTGATGTCGGATCCTGTTATCTTGGCCACCGGACAGACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCACAGAACATGCCCTCAAACCCAGCAAGTCCTCTCTCACACTATTCTTACTCCAAATTACTTGGTCCGAGACATGATTGCACAGTGGTGTAAAGAGCATGCAATTGAGATGCCAAAACCAGTTCAAGACATCAACCAAGTTGTGAGTAATGCGGATAGAGATCACTTGGATTCATTGCTTCATAAGCTGTCATTGTCTGTCCCTGATCAGAAAGAAGCTGCGAGAGAGCTTTGCCTCCTAACAAAGCGAATGCCTTCCTTTAGAACCCTCTTTGTTGAGTCTGCTGATGTGATTCCGCAGTTGCTCAGTCCGTTATCGTCTAATACGGCTCGCATTCACCCCGAACTCTATGAGGACTTGGTTACAACTATTCTAAACCTCTCAATTCAGGATGATAATAAGAAAGTATTTGGAGAGGATCCATCTGTCATTGCTCTTCTCAATGATGCTTTAAAATCCGGAACAATTCAAACAAGGAGCAATGCTGCAGCAGCCATTTTCACCTTATCTGCTCTCGACTCCAACAAGCAGATCATTGGAAAGTCTGGAGCCATCAAACATTTGCTTGATCTTTTAGAGGAGGGACAGCCATTAGCCATGAAAGATGCAGCATCAGCAATATTCAGCCTATGTCTCGTGCACGAGAATAAAGGGAGGACGGTGCGAGAAGGCGCAGTCCGGGTTATCCTGAACAAGATCATAGATCAGATTCTAGTTGATGAGTTGCTAGCTATATTGGCCCTCCTTTCCAGCCATCCCAGGGCCATTGAAGAAATGGGTGATCTTGGAGCTGTAGCCTTCTTGCTGGCTATCATAAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAATTTTGTATACAATCTGTTACAGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACGCTGTCTAAACTCGCCCGTTCTGGAACTTCAAGGGCGAAAAGGAAGGCTAACGGGATTCTTGAGAGGCTCAATCGATCACCCTGCTTAACACACACTGCTTAA 1365 0.4747 MAKRERGVSASAADAAAGKAAELKEKLKELVKAIVGHDDYTTRDAEDAIATLSSLRDLKRASASSIDDLSFPVPPEFRCPISTELMSDPVILATGQTYDRAYIQRWLDEGHRTCPQTQQVLSHTILTPNYLVRDMIAQWCKEHAIEMPKPVQDINQVVSNADRDHLDSLLHKLSLSVPDQKEAARELCLLTKRMPSFRTLFVESADVIPQLLSPLSSNTARIHPELYEDLVTTILNLSIQDDNKKVFGEDPSVIALLNDALKSGTIQTRSNAAAAIFTLSALDSNKQIIGKSGAIKHLLDLLEEGQPLAMKDAASAIFSLCLVHENKGRTVREGAVRVILNKIIDQILVDELLAILALLSSHPRAIEEMGDLGAVAFLLAIIREGTSERTKENCVAILYTICYSDRTKLKEVREEEKANGTLSKLARSGTSRAKRKANGILERLNRSPCLTHTA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120860g00008 454 CDD RING-Ubox_PUB 74 126 IPR045210 -
Stsc120860g00008 454 SUPERFAMILY RING/U-box 62 150 - -
Stsc120860g00008 454 Coils Coil 13 33 - -
Stsc120860g00008 454 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Stsc120860g00008 454 SUPERFAMILY ARM repeat 167 444 IPR016024 -
Stsc120860g00008 454 Gene3D - 204 345 IPR011989 -
Stsc120860g00008 454 Gene3D - 346 448 IPR011989 -
Stsc120860g00008 454 PANTHER U BOX DOMAIN-CONTAINING 19 444 - -
Stsc120860g00008 454 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Stsc120860g00008 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Stsc120860g00008 454 FunFam RING-type E3 ubiquitin transferase 156 449 - -
Stsc120860g00008 454 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Stsc120860g00008 454 Pfam U-box domain 73 144 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120860g00008 Stsc-Chr120860 53737 56258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120860g00008 135 454 U-box Gene Family AT3G07360 57.143 2.76e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120860g00008 - - gmx:100806619 637.106