Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120859g00039 ATGGTGCCATCATCAGATAATACTCCTACTAGCAAAGATAGAGATTGTGGAAAGCTTCCTGCCTCATCATCACCAACGTCACCAAAATCATCATCAAAGCTAACAAAAAAGGATCCACAAAACAAGAAGCTTCTAAATTGTAAGTTTTGCAAGAAGACATTCTCCAATAGCCAAGCATTGGGTGGCCATCAGAATGCACACAAGGAGGAGAGAGCGGCGGAGAAAAGAGAGAACATTCTCAACATGGCCTCTGCTTATAGGAACTATTCAACACCTTCTCAGTCTAAATGGCACAATTATTATGCTAATTTTTCTGATTTTAGTCATAATAGTAGTAGTAGAACACTAGGGCTACTACAACAACCACAAACAACTATTCATAATAGATCTTCATCAGTTGCACTTGGACCTGGCTACCTTCACAATGTATTGTGGGGAAATCAAATCATGAATCCTCAACGTAGCATGCATCAGTTTCCGCCGCGGCCGGTGTTTATGCCGCGGAAACAAATATTGCCAGTAAATTGGCCACCACAACAGTCACAGTTGAATTTACGTGAAAACATAAATCCAAGCCAAGCAAATAGACAGCAACAACAACAACCAGGTTTACCGGATAACGAATCTCAAGAAGACATGGATTTGACGCTCAAGCTGTCCCTTTAA 666 0.4099 MVPSSDNTPTSKDRDCGKLPASSSPTSPKSSSKLTKKDPQNKKLLNCKFCKKTFSNSQALGGHQNAHKEERAAEKRENILNMASAYRNYSTPSQSKWHNYYANFSDFSHNSSSRTLGLLQQPQTTIHNRSSSVALGPGYLHNVLWGNQIMNPQRSMHQFPPRPVFMPRKQILPVNWPPQQSQLNLRENINPSQANRQQQQQPGLPDNESQEDMDLTLKLSL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120859g00039 221 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 219 IPR044246 GO:0009788
Stsc120859g00039 221 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Stsc120859g00039 221 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
Stsc120859g00039 221 MobiDBLite consensus disorder prediction 192 207 - -
Stsc120859g00039 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Stsc120859g00039 221 MobiDBLite consensus disorder prediction 20 34 - -
Stsc120859g00039 221 Gene3D Classic Zinc Finger 21 99 - -
Stsc120859g00039 221 MobiDBLite consensus disorder prediction 192 221 - -
Stsc120859g00039 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120859g00039 Stsc-Chr120859 196879 197655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120859g00039 42 219 C2H2 Transcription Factor Family AT5G25160 31.088 6.31e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120859g00039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120859g00039 - - ahf:112708745 215.698