Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120859g00039 | ATGGTGCCATCATCAGATAATACTCCTACTAGCAAAGATAGAGATTGTGGAAAGCTTCCTGCCTCATCATCACCAACGTCACCAAAATCATCATCAAAGCTAACAAAAAAGGATCCACAAAACAAGAAGCTTCTAAATTGTAAGTTTTGCAAGAAGACATTCTCCAATAGCCAAGCATTGGGTGGCCATCAGAATGCACACAAGGAGGAGAGAGCGGCGGAGAAAAGAGAGAACATTCTCAACATGGCCTCTGCTTATAGGAACTATTCAACACCTTCTCAGTCTAAATGGCACAATTATTATGCTAATTTTTCTGATTTTAGTCATAATAGTAGTAGTAGAACACTAGGGCTACTACAACAACCACAAACAACTATTCATAATAGATCTTCATCAGTTGCACTTGGACCTGGCTACCTTCACAATGTATTGTGGGGAAATCAAATCATGAATCCTCAACGTAGCATGCATCAGTTTCCGCCGCGGCCGGTGTTTATGCCGCGGAAACAAATATTGCCAGTAAATTGGCCACCACAACAGTCACAGTTGAATTTACGTGAAAACATAAATCCAAGCCAAGCAAATAGACAGCAACAACAACAACCAGGTTTACCGGATAACGAATCTCAAGAAGACATGGATTTGACGCTCAAGCTGTCCCTTTAA | 666 | 0.4099 | MVPSSDNTPTSKDRDCGKLPASSSPTSPKSSSKLTKKDPQNKKLLNCKFCKKTFSNSQALGGHQNAHKEERAAEKRENILNMASAYRNYSTPSQSKWHNYYANFSDFSHNSSSRTLGLLQQPQTTIHNRSSSVALGPGYLHNVLWGNQIMNPQRSMHQFPPRPVFMPRKQILPVNWPPQQSQLNLRENINPSQANRQQQQQPGLPDNESQEDMDLTLKLSL | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120859g00039 | 221 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 23 | 219 | IPR044246 | GO:0009788 | |
Stsc120859g00039 | 221 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 47 | 67 | IPR013087 | - | |
Stsc120859g00039 | 221 | SUPERFAMILY | beta-beta-alpha zinc fingers | 41 | 72 | IPR036236 | - | |
Stsc120859g00039 | 221 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
Stsc120859g00039 | 221 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 45 | 72 | IPR013087 | - | |
Stsc120859g00039 | 221 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Stsc120859g00039 | 221 | Gene3D | Classic Zinc Finger | 21 | 99 | - | - | |
Stsc120859g00039 | 221 | MobiDBLite | consensus disorder prediction | 192 | 221 | - | - | |
Stsc120859g00039 | 221 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120859g00039 | Stsc-Chr120859 | 196879 | 197655 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120859g00039 | 42 | 219 | C2H2 Transcription Factor Family | AT5G25160 | 31.088 | 6.31e-14 | 66.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc120859g00039 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120859g00039 | - | - | ahf:112708745 | 215.698 |