Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120859g00038 ATGGGGTTTTATATGGAAGGGAAGGGGAAGACACACAACACAACGACGTCGTCTCCATACCCCAACTCACAAACGTGGACCCATTACTTTGAACCCCTATCCGTTTCTAGCCACATCAATTTCTTCCGTTGCAACGTGAATGGCCCAACTTACGGAGGGGCGAGCTTGTCTAATAAACAGAACGGTCAGGGAGTTAATTGTATTTCTCAATTGTCAGGATCTAGGGTTTTACACGCCTCACTCCTCTTCCTCCATAACCAAGAACACGCAGCGGAAGCAGAAGAGGGAAGGAAGATGGTGAAGTTCTTGAAGCCAAACAAAGCAGTCATCGTGCTGCAAGGCCGATACGCCGGTCGCAAAGCCGTCATCTTACGCGCCTTCGACGAAGGCACCCGCGACCGCCCCTACGGCCACTGCCTCGTCGCCGGGATCAAGAAGTACCCTTCCAAGGTTGTGAAGAGGGACTCCGCCAAGAAGACGGCGAAGAAGTCGCGCGTGAAGGCCTTCGTTAAGATGGTTAACTACCAGCACGTGATGCCCACGCGCTACACGCTTGACGTGGATTTGAAGGACGCCGTTACGGTCGAGTCTCTTCAGTCGAAGGATAAGAAGGTTGCGGCGCTCAAAGAGACGAAGAAGAGGCTCGAGGAGAGGTTCAAGACCGGCAAGAATCGCTGGTTCTTCACCAAGCTCAGATTCTAA 702 0.5256 MGFYMEGKGKTHNTTTSSPYPNSQTWTHYFEPLSVSSHINFFRCNVNGPTYGGASLSNKQNGQGVNCISQLSGSRVLHASLLFLHNQEHAAEAEEGRKMVKFLKPNKAVIVLQGRYAGRKAVILRAFDEGTRDRPYGHCLVAGIKKYPSKVVKRDSAKKTAKKSRVKAFVKMVNYQHVMPTRYTLDVDLKDAVTVESLQSKDKKVAALKETKKRLEERFKTGKNRWFFTKLRF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120859g00038 233 CDD KOW_RPL27 104 186 IPR041991 -
Stsc120859g00038 233 Gene3D - 99 233 IPR038655 -
Stsc120859g00038 233 MobiDBLite consensus disorder prediction 1 21 - -
Stsc120859g00038 233 ProSitePatterns Ribosomal protein L27e signature. 222 233 IPR018262 GO:0003735|GO:0005840|GO:0006412
Stsc120859g00038 233 PANTHER 60S RIBOSOMAL PROTEIN L27 99 233 IPR001141 GO:0003735|GO:0005840|GO:0006412
Stsc120859g00038 233 Coils Coil 198 225 - -
Stsc120859g00038 233 Pfam Ribosomal L27e protein family 150 233 IPR001141 GO:0003735|GO:0005840|GO:0006412
Stsc120859g00038 233 SUPERFAMILY Translation proteins SH3-like domain 100 233 IPR008991 -
Stsc120859g00038 233 SMART kow_9 102 129 IPR005824 -
Stsc120859g00038 233 FunFam 60S ribosomal protein L27 99 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120859g00038 Stsc-Chr120859 192260 195289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120859g00038 99 233 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 79.259 6.87e-79 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120859g00038 K02901 - mnt:21400722 253.062