Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120859g00003 ATGAAGAGGGCTAGAAAGTACGAAGGAAATGCAGTGGGAATCGACCTTGGCACAACATACTCTTGTGTTGCAGTATGGCAGGAGCAACATTGTCGAATGGAGATCATTCATAATGACCAGGGCAACAAAACAACACCTTCCTATGTTGCTTTCACTCAGAATCAAAGGTTTATTGGAGATGCTGCTAAGAACCAGGCTGCTGCCAACCCAACTAACACTGTCTTTGATGCTAAGAGGTTGATAGGTAGAAAATATAGTGACCCGGTGATCAAGAATGATCTCTTGATGTGGCCATTTAAAGTCACCGCTGGAGCTGATGACAAACCAATGATTGTTGTTACGTACAAGGATCAAGAGAAACACTTTTCTGCGGAAGAAATCTCATCCATGGTTCTTACTAAGATGCGAGATATTGCGGAAGCATACTTAGAGTCACCAGTTCGAAATGCTGTTATTACGGTACCTGCTTATTTCAATGGCTCTCAGCGCAAAGCTACCATAGATGCTGGCATCATTGCAGGTCTCAACGTGATGAGAATAATCAATGAGCCAACCGCTGCGGCCATTGCATATGGCCTTGACAAGAGATCTAATTGTGCCAGTGAGCGTAATATCTTCGTCTTTGATCTTGGAGGTGGCACTTTTGATGTGTCTCTCCTTACTATTAAAGGTAAGGTCTTCGAAGTTAAGGCTACTGCCGGAAACACTCACCTCAGCGGAGAGGATTTTGATAACAGACTAGTGAGTTACTTTGTTAATGAATTTGAGAGAAAGAATAAGGTTGACATCAGTGGCGATGCAAGAGCCTTGAGGAGATTGAGAACTGCTTGTGAGAAAGCAAAGAGGACCTTATCATACGCCGTTACCGCTACCATTAAATTAGATGCTTTCTATAATGGAATTGACTTCTATTTACCAATCACGCGTGCTAGGTTTGAAGAACTCAATATGGACCTCTTTAGAGAGTGCTTGGAAACGGCTGGTCGATGCCTTAGTGATGCGAAAATGGACAAGGCAGGTGTACATGATGTGGTGCTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGGAGTTATTGCAGGAATTTTTCGAGGGGAAGGAGCTTTGTAAGAGCATCAATCCTGATGAAGCAGTTGCGTATGGCGCCGCTGTTAAGGCTGCTTTGTTGAGTGGAGGTACTGAGAGTTCTGCCCCAAATTTGGTGCTGCAGGATGTTACTCCTCTATCTCTTGGTAAAGCAACAATAGAAGATGTCATGAGTGTTGTGATTCCAAGGAATACTACCATTCCTGTAAAGAAATCAGCAACTTTTTACACGGTCTATGACAATCAATCATCTGTGCTTGAAGAGATTTATGAAGGTGAGAGGACAAGAGCTAGCGATAACAACTTGCTTGGTCATTATACACTTTCGGGAATCCCTCCTGCTCCTAAAGGCCATCCTGTATCGATATGCTTCGATTTAGATGCTGATGGTATCCTATGTGTAACTTCTGAGGAGAAGACCACTGGCAATAAAAACCAGATTACCATAACAAATGATAAAGGAAGATTGTGGCAGGAAGAAATTGAAAGGCTTATTGAGGAAGCTGAGAGATACAAGGCTGAAGATGAGAAGTTTCTTCGGAAAGCAAATGCAATACTTGCTTTGGATGATTATGTTTATGACATGGAGAAAGCCTTAATCCGTTCAAAGCTTTGTCCCGAGGATAAGAAGAAGCTGAATTCTGCAATTGATAAGTCTAGAACTCTTCTTGAAGATGGTAACAAGGAGAAGAAAGAAATTCACGTGTTTGTTGAGAATCTTAATGAAGCTAAGCGTATTTTTGAGCCCATTAAAGCTAAGACTGGTTAG 1857 0.4222 MKRARKYEGNAVGIDLGTTYSCVAVWQEQHCRMEIIHNDQGNKTTPSYVAFTQNQRFIGDAAKNQAAANPTNTVFDAKRLIGRKYSDPVIKNDLLMWPFKVTAGADDKPMIVVTYKDQEKHFSAEEISSMVLTKMRDIAEAYLESPVRNAVITVPAYFNGSQRKATIDAGIIAGLNVMRIINEPTAAAIAYGLDKRSNCASERNIFVFDLGGGTFDVSLLTIKGKVFEVKATAGNTHLSGEDFDNRLVSYFVNEFERKNKVDISGDARALRRLRTACEKAKRTLSYAVTATIKLDAFYNGIDFYLPITRARFEELNMDLFRECLETAGRCLSDAKMDKAGVHDVVLVGGSSRIPKVQELLQEFFEGKELCKSINPDEAVAYGAAVKAALLSGGTESSAPNLVLQDVTPLSLGKATIEDVMSVVIPRNTTIPVKKSATFYTVYDNQSSVLEEIYEGERTRASDNNLLGHYTLSGIPPAPKGHPVSICFDLDADGILCVTSEEKTTGNKNQITITNDKGRLWQEEIERLIEEAERYKAEDEKFLRKANAILALDDYVYDMEKALIRSKLCPEDKKKLNSAIDKSRTLLEDGNKEKKEIHVFVENLNEAKRIFEPIKAKTG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120859g00003 618 Pfam Hsp70 protein 11 606 IPR013126 GO:0005524|GO:0140662
Stsc120859g00003 618 Gene3D - 521 616 IPR029048 -
Stsc120859g00003 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 207 220 IPR018181 -
Stsc120859g00003 618 Gene3D Actin; Chain A, domain 4 239 322 - -
Stsc120859g00003 618 FunFam Heat shock 70 kDa 239 322 - -
Stsc120859g00003 618 Gene3D - 12 386 - -
Stsc120859g00003 618 SUPERFAMILY Actin-like ATPase domain 202 392 IPR043129 -
Stsc120859g00003 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 14 21 IPR018181 -
Stsc120859g00003 618 PANTHER HEAT SHOCK PROTEIN 70KDA 11 581 IPR013126 GO:0005524|GO:0140662
Stsc120859g00003 618 Coils Coil 517 544 - -
Stsc120859g00003 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 520 616 IPR029048 -
Stsc120859g00003 618 SUPERFAMILY Actin-like ATPase domain 11 195 IPR043129 -
Stsc120859g00003 618 Gene3D - 75 130 - -
Stsc120859g00003 618 Gene3D - 196 370 - -
Stsc120859g00003 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 517 IPR029047 -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 62 70 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 400 419 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 150 170 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 213 223 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 373 393 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 10 23 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 480 496 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 40 52 - -
Stsc120859g00003 618 PRINTS 70kDa heat shock protein signature 341 357 - -
Stsc120859g00003 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 344 358 IPR018181 -
Stsc120859g00003 618 FunFam Heat shock protein 70 12 206 - -
Stsc120859g00003 618 FunFam Heat shock 70 kDa protein 394 548 - -
Stsc120859g00003 618 FunFam heat shock 70 kDa protein-like 75 130 - -
Stsc120859g00003 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 399 550 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120859g00003 Stsc-Chr120859 13296 15320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120859g00003 4 616 Calmodulin-binding Proteins AT3G12580 66.181 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120859g00003 K03283 - gmx:102667578 870.922