Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120858g00011 ATGGACATAGACGTTGACGAAGCTTCTCGACCCAAAGAGGGAAAGCCCATTTTGGTCATTTTAGTTGGAGCACCGGGGAGTGGCAAATCAACTTTCTGTGAACAAGTGATGCGTTCTTCAACTCGCCCCTGGGTTCGCGTTTGCCAGGACACCATTGGAAATGGAAAAGCAGGAAGTAAAGCTCAATGCTTAAGCAGTGCAGCTAATGCATTGAAGGATGATAAGAGTGTGTTTATTGACAGATGCAATCTTGACAGAGATCAGCGCTCTGAATTCGTAAAGCTAGGTGGTGTGCACAAAGTAGATGTGCATGCAGTTGTGCTTGATCTTCCTGCTAAACTCTGTATTTCTCGATCCGTTAAACGGACTGGCCATGAAGGAAATCTTCAGGGTGGAAAAGCTGCAGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGCGAAGGCTATAACCGGATAACATTTTGTCAGAATGAGAGTGACGTCAAAGATGCCGTTAATACTTACAGCTCTCTTGGGCCACTGGATAACCTCCCGCATGGCTGCTTTGGCCAGAAAAATCCAGATTCAAAAGTTCAAGTTGGTATAATGAAGTTCCTAAAAAAGGTGGCAGCCCCTGATGCTGCAGCAAGACCTGATGGAACTGGAAACACTACTTCCCAAACGCCTGGGAAAATTGATTCTTCCGACAAAGATGTAGAAATGGCATCCCCAACTCTAGATAGTCCCAACTTAGAGTCAAAGGAAGGAGAAAGCCAGGGAGTGGCCTTGAATGGTTCCCATGCCAGTCGAGTTTCTCTAGATGATGCTCCCACTCTAGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAATTATGAAAAGGCAGCTGATATTATTGTCGAGAAGGTTGCAGAGTTTACAGCTAAGCTTGGCAATGCTAGACTTGTGCTGGTTGATTTGACTCATAAATCAAAGATTCTCTCCTTAGTTAAAGCCAAAGCATCTGAAAAACACATTGACACCCAAAAGTTTCTTACCCATGTCGGTGACATTACTAAACTTCATTCTAGCGGAGGTTTAAACTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTAAAACCTGGAGGTGGAGGTGTTAATGCAGCCATTTTTAATGCTGCGGGTCCTGAACTGGAGTCTGCAACCAAAGAAAGAGCAAAATCTCTTTCACCTGGAAATGCTGTTGTTGTCCCTCTACCTGCATCTTCTCCTTTGTTTGTTACGGAGGGCGTAACCCATGTCATACATGTTCTTGGACCTAATATGAACCCTCAAAGACCAAATTGTCTCAACAATGATTATGAAAAAGGATGCAAAATTCTTCAAGATGCTTATGCTTCCCTATTTGAAGGCTTTGCATCAATTGTGAGGACCCAGTTAGGGCAATCTAGAGAAGAAAATGAAAACATTGTAGAAAAGGCTTTGAAATTGCAAGATAAATCTGAATGTTGTTCTAGAAATAATTTGACAAATATTGATCAAAAGAATAAGAGAGATGCTGATCATGGGTCTGAGAAGAGCAAAAAATGTAAAGGAATTCTGGATAGTTTCAGAGTGAGCTCTGATTCTAGAGATGAAAGGGTAGATTCGGAGCATAGAAGAAATGATGGGAGCATGAATAAGGCATGGGGATCATGGGCACAAGCTCTTCATCAAATGGCTATGCATCCTGAAAAGCATAAAGATGACTTGCTTGAGATTTCAGAGGATGTCGTTGTTCTGAATGATCTCTATCCTAAGTCACAGAAGCATGTTCTCATTGTGTCTCGTACCCGAGGAGTTGATAGCCTGGCAGATGTCCAAAAAGAACACTTTCAGTTGCTGAAGAATATGCATGATGTGGGTTTAAAGTGGGCCAGGAAGTTCCTAGATGAGAATGCTTCCCTGGTCTTTCGTCTTGGATATCACTCGGCTCCGTCAATGCGACAACTGCATTTACATGTTATCAGCCAGGACTTTGATTCAAAACATTTGAAGAACAAGAAGCACTGGAACTCATTCAACACTGCTTTCTTCCGTGACTCAGTAGACGTAATGGACGAGGTCTCTAGTCACGGGAAAGCAACACTGAAAGATGATGATAAGCTGTTGTCCATGGAGTTGAGGTGCGACAGATGCAGAAGCGCGCATCCGAACATACCCCGGTTGAAATCGCATATTGCCAGCTGCAAAGCTCCTTTTCCTGCTTACTTACTTGAAAATGGACGTCTGGTACATGCAACCGCTGAACCCTAA 2274 0.4301 MDIDVDEASRPKEGKPILVILVGAPGSGKSTFCEQVMRSSTRPWVRVCQDTIGNGKAGSKAQCLSSAANALKDDKSVFIDRCNLDRDQRSEFVKLGGVHKVDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGYNRITFCQNESDVKDAVNTYSSLGPLDNLPHGCFGQKNPDSKVQVGIMKFLKKVAAPDAAARPDGTGNTTSQTPGKIDSSDKDVEMASPTLDSPNLESKEGESQGVALNGSHASRVSLDDAPTLAFPSISTSDFQFNYEKAADIIVEKVAEFTAKLGNARLVLVDLTHKSKILSLVKAKASEKHIDTQKFLTHVGDITKLHSSGGLNCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKERAKSLSPGNAVVVPLPASSPLFVTEGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKILQDAYASLFEGFASIVRTQLGQSREENENIVEKALKLQDKSECCSRNNLTNIDQKNKRDADHGSEKSKKCKGILDSFRVSSDSRDERVDSEHRRNDGSMNKAWGSWAQALHQMAMHPEKHKDDLLEISEDVVVLNDLYPKSQKHVLIVSRTRGVDSLADVQKEHFQLLKNMHDVGLKWARKFLDENASLVFRLGYHSAPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTAFFRDSVDVMDEVSSHGKATLKDDDKLLSMELRCDRCRSAHPNIPRLKSHIASCKAPFPAYLLENGRLVHATAEP 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120858g00011 757 MobiDBLite consensus disorder prediction 244 259 - -
Stsc120858g00011 757 FunFam Transcription factor bHLH140 323 470 - -
Stsc120858g00011 757 Gene3D - 3 175 IPR027417 -
Stsc120858g00011 757 SUPERFAMILY HIT-like 560 720 IPR036265 -
Stsc120858g00011 757 ProSitePatterns HIT domain signature. 645 663 IPR019808 -
Stsc120858g00011 757 Pfam AAA domain 18 144 - -
Stsc120858g00011 757 Pfam Scavenger mRNA decapping enzyme C-term binding 570 676 - -
Stsc120858g00011 757 PANTHER APRATAXIN-RELATED 277 736 - -
Stsc120858g00011 757 Coils Coil 473 493 - -
Stsc120858g00011 757 ProSiteProfiles Macro domain profile. 330 506 IPR002589 -
Stsc120858g00011 757 SUPERFAMILY Macro domain-like 324 463 IPR043472 -
Stsc120858g00011 757 Pfam Macro domain 365 443 IPR002589 -
Stsc120858g00011 757 ProSiteProfiles HIT domain profile. 563 671 IPR011146 GO:0003824
Stsc120858g00011 757 Gene3D Leucine Aminopeptidase, subunit E, domain 1 318 474 IPR043472 -
Stsc120858g00011 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 159 IPR027417 -
Stsc120858g00011 757 Gene3D - 558 738 IPR036265 -
Stsc120858g00011 757 SMART YBR022w_8 342 484 IPR002589 -
Stsc120858g00011 757 MobiDBLite consensus disorder prediction 211 259 - -
Stsc120858g00011 757 FunFam Transcription factor bHLH140 6 175 - -
Stsc120858g00011 757 FunFam aprataxin isoform X2 557 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120858g00011 Stsc-Chr120858 85078 89703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120858g00011 1 751 C2H2 Transcription Factor Family AT5G01310 57.368 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120858g00011 K10863 - gmx:100786762 1164.06