Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120858g00008 ATGGAGGATTCGAAATCAATTGGAATAAAGCAAGAAGGGTATTCTAATTCTTCATCCATCATGAAAACAGAGGAATTCTTGTTCAGACGCGGCAAGGTGAAGCAAGCATTGAAGATATTTAGGAACCTGTTCTCGAAACTCTTGAGTGCGTATCAAACAGACGACTCTAATCCTGCGAAAGGAAAATATAAAGCTTTGAGAGATGCTGCAATGTTGATGAAGAAGAAGTATCAATGGGTGAACTGCGAAAAGCGGGTGGGACATGTCCCCGGGATTGAAGTTGGAGACCGATTTCAGTATAGGAATGAGCTCATTATCGTTGGTCTCCATCGCCAATTTACTAATGGAATTGATTATGTGGGGAAGGCTAACTACTCTTTAGCCACAAGCATTGTTGTAACCAATCGCTATGATAATGCTAGAAACCATGGTGGTTCATTGGTTTATATTGGTCAAGGGTGGAATCCTAATGTGCGAAATGATTCTATGCCCTGCGATCAAAAGTTGGTTTGCGGAAATCTTGCTTTGAAGAATAGCATGGATGCTAGGAGACCCGTGCGGGTTATATTGAAGGTTGATGGAGAATATGTTGGAGGGATAGAGAAGAACATCAATGATAAATTCTCATATATGTATGATGGATTGTATTTGGTTGAGAAGATGACACAAGAAAGAGGAAATCATGGGAAACTTGTGTTTAAGTTTTTCTTGAACAAAATCGTAGAGAAACCTTCAAATTGCCTTAAACCAAAGGATGAGCTTATCAAGAATGTCAATAAATTTGGGCAACTTGATGCTTTCACTTTAAGGAAAAGGCTCAAACCTAATGGTTATGCAACTAAGGATGTTATTATCATGAATGATATCTCGAAGGGGCAAGAGAAGTTTCCTATTCGAGTGGTTACTTCAACTAATGGTGATCTAACGCCTCCATCTTTTGATTACACAGTCAACAACATTTATGTGGATAGCTTCAAGAAGCCAATGTTATGTGGCTGTGATTGTGTAAATGGTTGTGTAGATTTTGAGAAATGTGCTTGTATTGTTAAGAATTGTGGAACAATACCATATGACTCTAAGAAAAGACTCGCTTCTAGAGTGGAATCACGTGTTATATACGAGTGCGGCTCATCTTGCAAGTGTTCCTCGTCTTGCTTCAACCGAGTGAGTCAATGTGGCCTTCAATTCCAACTCGAGATCTTCAACACCGAATCGAAGGGCTGGGGTGTTAGAACACGCTCTTTCATTCCCTTTGGAGTCTTTGTTTGTGAGTACGTTGGCGAAGTTCATCATCATAGAGAAGCTGGATCTAGGCATAACCTCGATATTTATATTGTAAATATGGCTGTCAGCAAGTGTTTAATCGATGCTACAAGACACGGAAACATTGGAAGATTCATAAACCATAGCTGTTCTCCTAATCTTCAGGCCGTAGAGGTTATGTATGATGACAAGGATAAGAACCTTCCGCACAAAATGTTCTTTGCATTACAGGACGTACCTGCTGGAAGAGAGCTGACTTTTGATTATAACAGCTGCAAGCCAAGGGTTATCAGGACTGGCAATAATGTTTGCCATTGTGGTTCACCCAAATGCGTTGGGCGGATTTACATTTAA 1617 0.4014 MEDSKSIGIKQEGYSNSSSIMKTEEFLFRRGKVKQALKIFRNLFSKLLSAYQTDDSNPAKGKYKALRDAAMLMKKKYQWVNCEKRVGHVPGIEVGDRFQYRNELIIVGLHRQFTNGIDYVGKANYSLATSIVVTNRYDNARNHGGSLVYIGQGWNPNVRNDSMPCDQKLVCGNLALKNSMDARRPVRVILKVDGEYVGGIEKNINDKFSYMYDGLYLVEKMTQERGNHGKLVFKFFLNKIVEKPSNCLKPKDELIKNVNKFGQLDAFTLRKRLKPNGYATKDVIIMNDISKGQEKFPIRVVTSTNGDLTPPSFDYTVNNIYVDSFKKPMLCGCDCVNGCVDFEKCACIVKNCGTIPYDSKKRLASRVESRVIYECGSSCKCSSSCFNRVSQCGLQFQLEIFNTESKGWGVRTRSFIPFGVFVCEYVGEVHHHREAGSRHNLDIYIVNMAVSKCLIDATRHGNIGRFINHSCSPNLQAVEVMYDDKDKNLPHKMFFALQDVPAGRELTFDYNSCKPRVIRTGNNVCHCGSPKCVGRIYI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120858g00008 538 SMART preset_2 286 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120858g00008 538 SUPERFAMILY SET domain 279 517 IPR046341 -
Stsc120858g00008 538 Gene3D SET domain 269 519 IPR046341 -
Stsc120858g00008 538 SMART set_7 396 517 IPR001214 GO:0005515
Stsc120858g00008 538 Pfam Pre-SET motif 289 388 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120858g00008 538 Pfam SET domain 407 511 IPR001214 GO:0005515
Stsc120858g00008 538 Gene3D - 68 260 IPR036987 -
Stsc120858g00008 538 ProSiteProfiles Pre-SET domain profile. 331 393 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120858g00008 538 ProSiteProfiles YDG domain profile. 87 239 IPR003105 -
Stsc120858g00008 538 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 29 530 - -
Stsc120858g00008 538 Pfam SAD/SRA domain 86 240 IPR003105 -
Stsc120858g00008 538 ProSiteProfiles Post-SET domain profile. 521 537 IPR003616 -
Stsc120858g00008 538 SMART G9a_1 82 243 IPR003105 -
Stsc120858g00008 538 ProSiteProfiles SET domain profile. 396 511 IPR001214 GO:0005515
Stsc120858g00008 538 SUPERFAMILY PUA domain-like 69 244 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120858g00008 Stsc-Chr120858 64172 66296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120858g00008 62 534 Su(var)3-9 homologs AT1G73100 34.749 3.60e-80 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120858g00008 SAD_SRA 8e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120858g00008 - K11420 aip:107627681 655.595