Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00048 ATGGGTGATGTTCTAAGCCCCTATACACTTTCACCCCCACCTTCTTCATCATCATCTTCTTCAACCAAGTCCAACATTTTCATGCTATATTACGGCCTCGCAGTGGTTGGAACCGCCGCAATAGCGCTAGCACTTTACAACTACTTCGTCATCAGAAGGTGCAGCCAGCAACAACAACCGCAGCCCGAAACAGCAAATGGGTTGGTCGAGGTTGTCGTGTCAAGCAGCATGAGCTTCGAGAATTCCCAAAGTAACTTGCTTTCAAGCTTCAAGTACAAGAAACAAGAAGCAGAGAAAAAAGATATAGCTCCAAAAAAAGAAGGTGGTGATGATGGTGGTTCTTATGATGAGTGCCCTGTTTGTTTATCGGTTTTCGAAGAAGGTGAAGAAGTGAGGAAGCTTCCGAGGTGCAAGCACTCTTTCCATGCTCAGTGTATAGATATGTGGCTTTACTCTCACTTTGATTGCCCTGTTTGCCGTACACCGGTGGGGCCTTTCTTCCGCCGTATGCCACCGGAGAGTAATAATAATTCCGTTGAGGAGTTGCCGGAATCCGGTGGTGTGTGA 567 0.4691 MGDVLSPYTLSPPPSSSSSSSTKSNIFMLYYGLAVVGTAAIALALYNYFVIRRCSQQQQPQPETANGLVEVVVSSSMSFENSQSNLLSSFKYKKQEAEKKDIAPKKEGGDDGGSYDECPVCLSVFEEGEEVRKLPRCKHSFHAQCIDMWLYSHFDCPVCRTPVGPFFRRMPPESNNNSVEELPESGGV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00048 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 163 IPR044675 -
Stsc120857g00048 188 FunFam RING-H2 finger protein ATL1 67 165 - -
Stsc120857g00048 188 SUPERFAMILY RING/U-box 117 172 - -
Stsc120857g00048 188 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Stsc120857g00048 188 SMART ring_2 118 159 IPR001841 -
Stsc120857g00048 188 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120857g00048 188 Pfam Ring finger domain 116 160 IPR001841 -
Stsc120857g00048 188 CDD RING-H2_EL5-like 117 160 - -
Stsc120857g00048 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00048 Stsc-Chr120857 217979 218796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00048 105 163 C3H Transcription Factor Family AT5G10380 57.627 7.96e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00048 - - aprc:113852327 199.904