Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00046 ATGCCGGTGAGTCTGACGGCGCACGCGATCCCGGCGATCGTAGCAGGCGACATCAACACGATTCCACTATTGCAGGTTCTGGATATCAAGTTGATGTCGAACAACAAGCAGCAGGAGAGGTACCGGCTTCTGCTATCCGATGCGGTTTCCTCTCAGCAAGCTATGCTCGCCACTCAGCTCAACGACCGAGTCAAAAGTGGACAAGTTAGGAAAGGTTCAGTCGTTCGGCTCATTGAGTACATTTGCAGTCCTATTCAAAACCGCAAGATTGTTGTGGTGCTGAACATGGAAACTATAATGCTAGACTGCGAGATCATTGGAAATCCAACACCATTTGTGGAATTTGATTTACCAGCCCAGGGTGCTTTGCTAAATAACTCTATGCAGAACTTGTCCAAGAGTAGTAATTATCAGCTGCCACCACAAAATCCCAGTTATAATGTCCAAAATTTTCAGTTGCCACCGAAGAATGCAAGTTCCTATGTGCCAAATTTCCGGCCAACTGTTCAACCTCCATACCAACCACCACCAGTTTACAGAGGCCAAGGTGCAATTATGAGGAATGAGGCCCCATCGCGTGTTATTCCTATATCTGCTCTGAATCCTTATCAAGGTCGATGGGCCATCAAGGCAAGGGTGACTGCAAAGGGTGATCTGCGCCGTTATAATAATGCCAGGGGAGATGGGAAAGTATTCTCATTTGATCTCCTTGACTCTGAAGGTGGTGAAATTCGAGTGACCTGCTTTAATGCTGTTGTTGATCAGTTCTATGATGCAATCGAGGTTGGAAGAGTTTACATGATATCCAAAGGTAGCCTGAAACCTGCACAGAAAAATTATAACCATTTGAAGAATGAATGGGAAATTCTTTTGGATTCAACATCAACTGTTGAGCTTTTCCCTGGGGAAGATGATTCTATACCTAAACAACAATTTTCGTTTAAGCCTATAAATGATATTGAGAACTTTGACAATAACTCCATACTTGATGTTATTGGGGTGGTGACTCGTGTGAATCCATCAGTTCCCATCTTGAGGAAGAACGGAATCGAAACCCAGAGAAGAATTTTGATACTGAAGGACTGGTCTGGAAGGAGTGTTGAACTGACCCTTTGGGGTGAATTCTGCAACAGGGAAGGGCAAAATTTGCAACAGATGGTGGATGCAGGATTGTTCCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCCATAGGGACTATCTCTGCCACACAGCTTTTCATAAATCCTGATTTCCCTGAGGCACGTAGCTTAAGAGACTGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTGTCTATTTCTAAAGACATTATACCTGGAGGACCAAAGAATGATGTGCGCAAAACTTTGTCCCAGATCAAGGATGAAGGTCTGGGTCGTTCGGATAAGCCGGATTGGATAACAGTGAAGGCAACTATATCTTTCATCAAGACAGATTCGTTCTATTACACAGCTTGCCCTCTGAAGATTGGAGAGCGACAGTGCAACAAGAAAGTGACCAAATCAGGAAACTCGAGGTGGCTGTGTGATCGGTGCAACCAAGAGTTTGATGAGTGTGATTACCGCTTTCTTCTTCAAGCTCAAATTCTGGATCACACTGGAATTACTTGGGTAACTGCTTTCCAGGAAACAGGGGAAGAGATTATGAGTTTCACGGCGAAGGAATTGTACTCATTGAAGCATGAACAAGAGGATGATGACAAGTTCATAGGAATAATCAAGAGTAGACTCTTCAATGAGTTTGTCTTTAGGCTTAAAATTAAAGAGGAATTATATGGTGATGAACAGAGGGTGAAGATTACAGTAGCAAAGGCAGACAAGGTAGATTACTCTTCGGAGAGTAGGTATGTGCTTGATATGATTTCAAAAATCGGTAGGCAGTAA 1923 0.4363 MPVSLTAHAIPAIVAGDINTIPLLQVLDIKLMSNNKQQERYRLLLSDAVSSQQAMLATQLNDRVKSGQVRKGSVVRLIEYICSPIQNRKIVVVLNMETIMLDCEIIGNPTPFVEFDLPAQGALLNNSMQNLSKSSNYQLPPQNPSYNVQNFQLPPKNASSYVPNFRPTVQPPYQPPPVYRGQGAIMRNEAPSRVIPISALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVVDQFYDAIEVGRVYMISKGSLKPAQKNYNHLKNEWEILLDSTSTVELFPGEDDSIPKQQFSFKPINDIENFDNNSILDVIGVVTRVNPSVPILRKNGIETQRRILILKDWSGRSVELTLWGEFCNREGQNLQQMVDAGLFPILAVKAGKVNDFSGKSIGTISATQLFINPDFPEARSLRDWFDRVGKDSASLSISKDIIPGGPKNDVRKTLSQIKDEGLGRSDKPDWITVKATISFIKTDSFYYTACPLKIGERQCNKKVTKSGNSRWLCDRCNQEFDECDYRFLLQAQILDHTGITWVTAFQETGEEIMSFTAKELYSLKHEQEDDDKFIGIIKSRLFNEFVFRLKIKEELYGDEQRVKITVAKADKVDYSSESRYVLDMISKIGRQ 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00046 640 CDD RPA1N 9 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc120857g00046 640 FunFam Replication protein A subunit 193 302 - -
Stsc120857g00046 640 CDD RPA1_DBD_A 196 299 - -
Stsc120857g00046 640 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc120857g00046 640 FunFam Replication protein A subunit 4 113 - -
Stsc120857g00046 640 SUPERFAMILY Nucleic acid-binding proteins 194 307 IPR012340 -
Stsc120857g00046 640 Gene3D - 4 113 IPR012340 -
Stsc120857g00046 640 Gene3D - 306 444 IPR012340 -
Stsc120857g00046 640 Gene3D - 193 300 IPR012340 -
Stsc120857g00046 640 Gene3D - 450 637 IPR012340 -
Stsc120857g00046 640 NCBIfam replication factor-a protein 1 (rpa1) 4 636 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc120857g00046 640 SUPERFAMILY Nucleic acid-binding proteins 311 438 IPR012340 -
Stsc120857g00046 640 FunFam Replication protein A subunit 306 444 - -
Stsc120857g00046 640 FunFam Replication protein A subunit 445 637 - -
Stsc120857g00046 640 Pfam Replication factor-A C terminal domain 479 629 IPR013955 -
Stsc120857g00046 640 CDD RPA1_DBD_C 463 636 IPR047192 -
Stsc120857g00046 640 PANTHER REPLICATION FACTOR A 1, RFA1 207 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc120857g00046 640 Pfam OB-fold nucleic acid binding domain 208 288 IPR004365 GO:0003676
Stsc120857g00046 640 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Stsc120857g00046 640 CDD RPA1_DBD_B 328 435 - -
Stsc120857g00046 640 SUPERFAMILY Nucleic acid-binding proteins 460 637 IPR012340 -
Stsc120857g00046 640 Pfam Replication protein A OB domain 317 421 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00046 Stsc-Chr120857 212945 215578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00046 24 636 Core DNA Replication Machinery Family AT2G06510 67.624 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00046 K07466 - zju:107409151 961.444