Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00038 ATGATGAATGGTGGAAGCAGCAGGAGCAGCAGCAGGTTCCCATTCACACCATCACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCTGGCATTTCCATCCCCCCTGATCTCCTCTTCTCCATCAAAAGGGGCTACCACCTTGACCACTCTAGGCTCTTCCCTCACCACCACCCTCCACAACACCTTGGGTGGAACTATCTGCAGATGGGTCTGGGAAGAAAGATAGACCCTGAACCAGGGAGGTGCAGAAGAACCGATGGGAAAAAATGGAGATGCTCAAAGGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAACAAACTTTGAAGCAATCACCACCAACAACAAACACGGATGATGCTGCTTCTTCTCCTGCCGCTCCTCCATCTTCAACCACTACAACAATCTTGTCAATCACCAACAACAACAACAACTCTCTCTCTCCTCTTTCATCTGCACCACTGTCCTCTCATGACATCTATCATCAACACCAACAACACTCCTTCCTCTACCACCACCACCAGCAACCCTCTTCAAGGTCCTCCAACCCCATTGGCTTCTCTTTCCAGGACAACAACAACAACCACGCTGCTCCTTTGTTTCTTGACACCACTGGTTCTTCATCCCAGACCAACACTGACTGCAGGGAGAGGTACATTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACGGAGCCTTCGGGAACAATGAGAAGCTTCTCTGCTTCGTCCATGGATGATTCATGGCAGCTGACACCACTCACCATAAGCTCCTCATCATCTTCATCGAAGCAGAGGAGCTGCTTGTCCAATGAAAACAACAACGACAACGAGGAGCACTCTTACTTGCAGCTTCACCACCACCATAGCTTCAACAACTCATCAAAGCAAAGAGAAGCAGAGCAAGATCATCGTGAGAAGACCACCGTTCATCGATTCTTCGATGAATGGCCTCACAAGAGTAGAGAAGGATCATCATGGCTTGATTTGGATGACAAATCTTCCACAACTCAGCTTTCCATTTCCATCCCCGCATCCTCTCATCATCATGACTTGACAACTTTCACTTCAAGAAACCATAGAGATGGTTAA 1158 0.4801 MMNGGSSRSSSRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRGYHLDHSRLFPHHHPPQHLGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQTLKQSPPTTNTDDAASSPAAPPSSTTTTILSITNNNNNSLSPLSSAPLSSHDIYHQHQQHSFLYHHHQQPSSRSSNPIGFSFQDNNNNHAAPLFLDTTGSSSQTNTDCRERYIYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSSSSSKQRSCLSNENNNDNEEHSYLQLHHHHSFNNSSKQREAEQDHREKTTVHRFFDEWPHKSREGSSWLDLDDKSSTTQLSISIPASSHHHDLTTFTSRNHRDG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00038 385 MobiDBLite consensus disorder prediction 275 299 - -
Stsc120857g00038 385 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc120857g00038 385 MobiDBLite consensus disorder prediction 125 159 - -
Stsc120857g00038 385 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc120857g00038 385 Pfam QLQ 14 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc120857g00038 385 MobiDBLite consensus disorder prediction 109 159 - -
Stsc120857g00038 385 PANTHER GROWTH-REGULATING FACTOR 5 11 230 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc120857g00038 385 MobiDBLite consensus disorder prediction 363 385 - -
Stsc120857g00038 385 ProSiteProfiles WRC domain profile. 82 126 IPR014977 -
Stsc120857g00038 385 MobiDBLite consensus disorder prediction 313 337 - -
Stsc120857g00038 385 Pfam WRC 83 125 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00038 Stsc-Chr120857 183362 185226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00038 14 167 GRF Transcription Factor Family AT4G37740 46.154 6.80e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc120857g00038 WRC 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00038 - - gmx:100783524 439.499