Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00026 ATGAAGATCACATTGAGTTCTTTGTTCCTAAGCTGTTACAAGGGTGATAGTTCTGATTGCCCACCGTCTCCAAAGAAATCAAACAACAAGGTGGTGGCAACCAAGGGTAACACTAGCACTAGGAGTGGTTCCAACAGAGTTTCAGTTACCGATTTGAGTTTCCCAAGTGCTACCACGCTCTCAGAGGATCTGTCCATATCTCTAGCAGGGACCAACCTTTATGTGTTCTCACTCGCGGAACTCAAGATCATTACTCAGAGCTTCTCATCCAGTAACTTTCTGGGTGAAGGAGGCTTCGGTCCTGTCCACAAAGGCTTCATTGATGACAAGGTAAGGCCTGGTCTTAAGGCTCAGCCCGTTGCTGTTAAGCTTTTGGATTTGGATGGAACTCAGGGCCACAAGGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTGAGTCACCCGCACCTTGTGAAATTGATTGGATATTGCTGTGAAGACGAACATAGGCTTCTGGTATATGAGTATTTACCACGAGGAAGCTTAGAAAATCAACTCTTTAGAAGATACTCGGCTTCATTGCCATGGTCAACAAGAATGAAGATTGCTGTTGGAGCAGCCAAAGGTCTCTCCTTTCTCCATGAACAAAAGAAGCCAGTCATCTACAGAGATTTCAAGGCTTCAAACATCTTGTTAGACTCGGATTACAATGCAAAGCTATCTGATTTCGGGTTGGCAAAAGACGGTCCAGAAGGAGATGACACACACGTATCGACACGTGTGATGGGGACTCAAGGATATGCAGCACCAGAATATGTGATGACAGGTCACTTGACAGCAATGAGTGATGTGTACAGCTTTGGAGTGGTGTTGTTGGAGATGTTAACAGGAAGAAGATCAGTGGACAAGGGGCGTCCATCAAGAGAACAGAACCTTGTGGAATGGGCAAGGCCAGCTCTCAACGATCCAAGGAAGCTTCCAAGGATAATGGATCCAAGGCTTGAAGGACAGTTCTCTGACATGGGTGCTAAGAAGGCTGCAGCCTTGGCTTACCAGTGTCTTAGCCACAGGCCTAGGAACCGTCCTTCTATGGCTACTGTTGTTAAGATCCTTGAGCCCCTTCAGGACTATGACGATGTCCCCATTGGACCCTTTGTTTACACTGTTCCCCCGGATGCAAATAATAACATGGATGCTGAAACTCCCAAGGAGAAGAAGAGGCACCATCACCATCACCATTCTCATTCTAGGAGGCATCATCCTCTCAAGTCCCCAAAGACTTCACCAGATTCACACAATCATCATCATCGTCATGGTTCAACAAGTAGTTCCTCTACTTCACCCGATGACAAATCCAATGCATCATCGCGTGCACATTAG 1362 0.4648 MKITLSSLFLSCYKGDSSDCPPSPKKSNNKVVATKGNTSTRSGSNRVSVTDLSFPSATTLSEDLSISLAGTNLYVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRPGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLSHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLSFLHEQKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLEMLTGRRSVDKGRPSREQNLVEWARPALNDPRKLPRIMDPRLEGQFSDMGAKKAAALAYQCLSHRPRNRPSMATVVKILEPLQDYDDVPIGPFVYTVPPDANNNMDAETPKEKKRHHHHHHSHSRRHHPLKSPKTSPDSHNHHHRHGSTSSSSTSPDDKSNASSRAH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00026 453 FunFam Serine/threonine-protein kinase BIK1 55 170 - -
Stsc120857g00026 453 CDD STKc_IRAK 94 368 - -
Stsc120857g00026 453 Gene3D Transferase(Phosphotransferase) domain 1 171 375 - -
Stsc120857g00026 453 MobiDBLite consensus disorder prediction 417 431 - -
Stsc120857g00026 453 MobiDBLite consensus disorder prediction 21 45 - -
Stsc120857g00026 453 ProSiteProfiles Protein kinase domain profile. 88 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120857g00026 453 Gene3D Phosphorylase Kinase; domain 1 51 170 - -
Stsc120857g00026 453 MobiDBLite consensus disorder prediction 383 453 - -
Stsc120857g00026 453 FunFam Probable serine/threonine-protein kinase PBL8 171 380 - -
Stsc120857g00026 453 SUPERFAMILY Protein kinase-like (PK-like) 64 367 IPR011009 -
Stsc120857g00026 453 MobiDBLite consensus disorder prediction 399 416 - -
Stsc120857g00026 453 PANTHER OS01G0588500 PROTEIN-RELATED 42 369 - -
Stsc120857g00026 453 MobiDBLite consensus disorder prediction 15 45 - -
Stsc120857g00026 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Stsc120857g00026 453 Pfam Protein tyrosine and serine/threonine kinase 92 365 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00026 Stsc-Chr120857 131083 133139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00026 76 401 Glycoside Hydrolase AT3G07070 50.602 1.67e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120857g00026 PK_Tyr_Ser-Thr 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00026 - - gmx:100799411 679.863