Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00016 ATGGGACTCTCCGGCACCATCGACATCGACGCTCTCTTGCAAATCCCAAGCCTCAGGACCATCAGCTTCATCAACAACTCATTCTCCGGCCCCATTCCCGACATCAACAGGATCGGCGCCCTCAAAGCCATTTACCTCAACACCAACCAATTCTCCGGTTCCATTCCGCCTGATTTCTTCACCAAGTTAGCCTCCTTGAAGAAGCTATGGCTCAACGACAATAAATTCTCAGGTAATATACCCGTATCATTGACCAACCTTCGCTTCCTTTCAGAGTTGCGTCTCGACAACAACGACTTCTCGGGGACTCTACCTGCCTTCTCCCAACCAATGAGAATCATTGACTTTTCCAACAACAGGCTAGAAGGTCAAATACCACCATCCATGGCGGGCTTCGAAGCTAGCTCCTTCGCCGGGAATCAAGCTCTCTGCGGGAAGCCCCTCAAGGAATGCGGCAGTGTGGACGCCGCTTCTTCTGAGCAGGGCAGCTCTGGCACCCACGGGGGATTGAGTTGGTTCTGGAAGATCCTGTTTATCCTTCTTCTGGCCACGATTCTGGCGGCAGTGTTCATCTTGGTGAAGAATCGGCGGGACCAAAATGATAAGTTCAGCGTGATGAGCAGAGGGAATAGCCACGTGGACGAGGAAGTAATGCAGGTGAAGGTGGCGAAGAGCGGTAAGGGCACCGGCATCGGAAGGAGAGGAGGTGGGGGGAGAGGTGACCTTATAATGGTGAACGACGAGAAGGGCGTGTTTGGGCTGACAGACTTGATGAAGGCGGCAGCGGAGGTGCTGGGGAACGGGGGATTGGGGTCGGCGTACAAGGCGGCGATGGCAAACGGGCTGTCGGTGGTGGTTAAGAGGATGAGGGAGATGAATAAGGTGAGCAGAGACATATTCGACGCAGAGATGAGAAGGTACGGGAGGATGGGAAACCGTAACATCCTGAGCCCTCTTGCTTACCATTACCGGAAGGAGGAGAAGCTGTTTGTGACGGAGTACATTCCCAAAGGAAGCTTGCTTTATGTGCTGCATGGCGACAGAGGATCCAGCCATGGGGAACTGACGTGGCCAAGGCGTTTGATGATTGTGAAGGGAATCGCAAAAGGTTTGGGTTTTCTTTACAGTGAATTTTCAACGGAAGAGCTGCCGCATGGGAACCTGAAATCCAGCAACATTCTGTTGAGCAACGAGTACGAGGCTCTGCTTAGCGACTTTGGATTTCATTCCCTCATGAACCCAAAGTACGCCGCTCAAACATTGTTTGCCTACAAAACTCCTGACTACACGGAATACCAGCAGGTGTCTCAGAAGACCGATGTTTACTGCCTTGGAATCATCATTCTCGAGATCATCACCGGCAAGTTCCCCTCTCAGTATCACAGCAATGGCAAGGGCGGCACTGATGTTGTTCAATGGGTCTCCACCGCTCTTTCCGATGCCAGAGAGGCCGATTTAATCGACCCGGACTTGCTCCACAACAACAACAATTCCGTCTCTCAGATGCTGCAGCTCCTCCACCTTGGGGCTGCTTGCACCGAACCTAACCCCCAACAACGTCTTCCCATGAAGGAAGCCATTAGGAGGATAGACGATTTACAACCTTAA 1608 0.5224 MGLSGTIDIDALLQIPSLRTISFINNSFSGPIPDINRIGALKAIYLNTNQFSGSIPPDFFTKLASLKKLWLNDNKFSGNIPVSLTNLRFLSELRLDNNDFSGTLPAFSQPMRIIDFSNNRLEGQIPPSMAGFEASSFAGNQALCGKPLKECGSVDAASSEQGSSGTHGGLSWFWKILFILLLATILAAVFILVKNRRDQNDKFSVMSRGNSHVDEEVMQVKVAKSGKGTGIGRRGGGGRGDLIMVNDEKGVFGLTDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRYGRMGNRNILSPLAYHYRKEEKLFVTEYIPKGSLLYVLHGDRGSSHGELTWPRRLMIVKGIAKGLGFLYSEFSTEELPHGNLKSSNILLSNEYEALLSDFGFHSLMNPKYAAQTLFAYKTPDYTEYQQVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVSTALSDAREADLIDPDLLHNNNNSVSQMLQLLHLGAACTEPNPQQRLPMKEAIRRIDDLQP 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00016 535 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 9 104 - -
Stsc120857g00016 535 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 534 IPR046959 -
Stsc120857g00016 535 Pfam Leucine rich repeat 41 100 IPR001611 GO:0005515
Stsc120857g00016 535 SUPERFAMILY Protein kinase-like (PK-like) 263 528 IPR011009 -
Stsc120857g00016 535 SUPERFAMILY L domain-like 3 132 - -
Stsc120857g00016 535 Gene3D Ribonuclease Inhibitor 113 152 IPR032675 -
Stsc120857g00016 535 Gene3D Ribonuclease Inhibitor 1 109 IPR032675 -
Stsc120857g00016 535 ProSiteProfiles Protein kinase domain profile. 259 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120857g00016 535 Gene3D Transferase(Phosphotransferase) domain 1 335 534 - -
Stsc120857g00016 535 Gene3D Phosphorylase Kinase; domain 1 254 334 - -
Stsc120857g00016 535 Pfam Protein kinase domain 263 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00016 Stsc-Chr120857 93828 95724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00016 1 531 Receptor kinase-like Gene Family AT3G42880 48.128 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120857g00016 Pkinase 6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00016 - - gmx:100816925 726.857