Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00013 ATGTCGACCTCATCGGAATATTCTGGAGTTTCCGCCCAAAATCCGGTCAAGTCGCCGGAGATGTCCACCTTCTCCCAGACTTGTAATCGGTTGAGCCAATACCTCAGGGAAAACGGTTCCTTCGGTGACCTCGCCCTCGGCATAACAAAACGCAACCCCGCCCATGAAACACACGCAGGAGGCTCAGCTGAGAATTCATGCCATTCTGCAACAATCATGGAGTTATTTCCCAGGAATGAAAACAATAATGTGACAACCATGGATCTGCTTTATCCACGTGCTCCTGTTTATGGGCGCCAGTGCCACTCCCCCGAGGAGGACACAAGTGCATTTAAGGATGGTAAAGGTGCACAACTAACAATCTTTTATGGTGGCCAAGTGATGGTGTTTGATGACTTTCCTGCTGAGAAAGCGGAGCAGATTATGTCCTTGGCTAAACAGGGCAACTCCTCTGCATGCCCTTCTACTCACACTCACACCTACTTGTTTCAACCCCAATCCACACCTGTTGTTGCTGATCTACCGATTGCAAGGAAGGCATCACTGCATCGCTTCTTGGAGAAGAGAAAGGATAGAATTGCTGCAAAAGCACCATATCAGAGCAGAAATCCCGTGTCGGTCCCTAGTAAAGCACCTGAATCATCGTCTATGGCATGGCTTGGATTAGTTGCTTAA 675 0.4859 MSTSSEYSGVSAQNPVKSPEMSTFSQTCNRLSQYLRENGSFGDLALGITKRNPAHETHAGGSAENSCHSATIMELFPRNENNNVTTMDLLYPRAPVYGRQCHSPEEDTSAFKDGKGAQLTIFYGGQVMVFDDFPAEKAEQIMSLAKQGNSSACPSTHTHTYLFQPQSTPVVADLPIARKASLHRFLEKRKDRIAAKAPYQSRNPVSVPSKAPESSSMAWLGLVA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00013 224 Pfam tify domain 116 145 IPR010399 -
Stsc120857g00013 224 MobiDBLite consensus disorder prediction 1 23 - -
Stsc120857g00013 224 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Stsc120857g00013 224 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 215 IPR040390 -
Stsc120857g00013 224 Pfam Jas motif 175 200 IPR018467 -
Stsc120857g00013 224 SMART tify_2 112 147 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00013 Stsc-Chr120857 79357 81244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00013 23 224 Tify Gene Family AT1G19180 42.373 6.30e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc120857g00013 tify 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00013 K13464 - gmx:100527510 212.231