Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120857g00012 ATGCAGCAACAAAGGTTGAGGCAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTAGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCGAGTGCAGGCGCACTTGAAGGGTGCAAGCTCATTAGGAAAGATAAGTCGTCCTATGGCTTCGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCTATTGTAACTCTCAATGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGTTTCTCTGTCTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGACCAGAAAACAGGTCGGTCCAGGGGATTTGGCTTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGCTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAAGAAGCGCAGCAAGTAACCAATGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCGGAGGTTACATCTGTTGATCTCCATCACCATTTTCATGCCCTTGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGGGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCCATCCAAATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCACTTCCCCCACCTAGTACTGCACATGTCCCTGGCTTTTCTCCTGTGGGACTCGCAGCGTATGAACGGCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCCCTTTTGCATCAGCAGAGTCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGATGCTCCTAACCAGCACCTAATGTACTATCAGTAA 1203 0.4705 MQQQRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEAQQVTNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPPPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALLHQQSQHAAMKQAAMGMDAPNQHLMYYQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120857g00012 400 SUPERFAMILY RNA-binding domain, RBD 241 331 IPR035979 GO:0003676
Stsc120857g00012 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 319 IPR000504 GO:0003723
Stsc120857g00012 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Stsc120857g00012 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Stsc120857g00012 400 SMART rrm2_1 47 116 IPR003954 GO:0003676
Stsc120857g00012 400 SMART rrm2_1 132 205 IPR003954 GO:0003676
Stsc120857g00012 400 Gene3D - 232 330 IPR012677 -
Stsc120857g00012 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Stsc120857g00012 400 Gene3D - 1 128 IPR012677 -
Stsc120857g00012 400 CDD RRM2_PUB1 130 209 - -
Stsc120857g00012 400 MobiDBLite consensus disorder prediction 209 250 - -
Stsc120857g00012 400 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Stsc120857g00012 400 SMART rrm1_1 132 205 IPR000504 GO:0003723
Stsc120857g00012 400 SMART rrm1_1 47 116 IPR000504 GO:0003723
Stsc120857g00012 400 SMART rrm1_1 253 322 IPR000504 GO:0003723
Stsc120857g00012 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Stsc120857g00012 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Stsc120857g00012 400 SUPERFAMILY RNA-binding domain, RBD 45 211 IPR035979 GO:0003676
Stsc120857g00012 400 FunFam Oligouridylate-binding protein 1C 229 330 - -
Stsc120857g00012 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Stsc120857g00012 400 Gene3D - 129 231 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120857g00012 Stsc-Chr120857 74113 78159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120857g00012 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 27.027 4.43e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120857g00012 K13201 - gmx:100813736 700.664