Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120857g00012 | ATGCAGCAACAAAGGTTGAGGCAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTAGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCGAGTGCAGGCGCACTTGAAGGGTGCAAGCTCATTAGGAAAGATAAGTCGTCCTATGGCTTCGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCTATTGTAACTCTCAATGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGTTTCTCTGTCTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGACCAGAAAACAGGTCGGTCCAGGGGATTTGGCTTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGCTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAAGAAGCGCAGCAAGTAACCAATGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCGGAGGTTACATCTGTTGATCTCCATCACCATTTTCATGCCCTTGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGGGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCCATCCAAATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCACTTCCCCCACCTAGTACTGCACATGTCCCTGGCTTTTCTCCTGTGGGACTCGCAGCGTATGAACGGCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCCCTTTTGCATCAGCAGAGTCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGATGCTCCTAACCAGCACCTAATGTACTATCAGTAA | 1203 | 0.4705 | MQQQRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEAQQVTNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPPPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALLHQQSQHAAMKQAAMGMDAPNQHLMYYQ | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120857g00012 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 241 | 331 | IPR035979 | GO:0003676 | |
Stsc120857g00012 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 319 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | SMART | rrm2_1 | 47 | 116 | IPR003954 | GO:0003676 | |
Stsc120857g00012 | 400 | SMART | rrm2_1 | 132 | 205 | IPR003954 | GO:0003676 | |
Stsc120857g00012 | 400 | Gene3D | - | 232 | 330 | IPR012677 | - | |
Stsc120857g00012 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | Gene3D | - | 1 | 128 | IPR012677 | - | |
Stsc120857g00012 | 400 | CDD | RRM2_PUB1 | 130 | 209 | - | - | |
Stsc120857g00012 | 400 | MobiDBLite | consensus disorder prediction | 209 | 250 | - | - | |
Stsc120857g00012 | 400 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 129 | 224 | - | - | |
Stsc120857g00012 | 400 | SMART | rrm1_1 | 132 | 205 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | SMART | rrm1_1 | 253 | 322 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 43 | 329 | - | - | |
Stsc120857g00012 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 45 | 211 | IPR035979 | GO:0003676 | |
Stsc120857g00012 | 400 | FunFam | Oligouridylate-binding protein 1C | 229 | 330 | - | - | |
Stsc120857g00012 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | IPR000504 | GO:0003723 | |
Stsc120857g00012 | 400 | Gene3D | - | 129 | 231 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120857g00012 | Stsc-Chr120857 | 74113 | 78159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120857g00012 | 42 | 320 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 27.027 | 4.43e-20 | 90.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120857g00012 | K13201 | - | gmx:100813736 | 700.664 |