Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120856g00026 ATGCATCAATATGTTTACAATTGGATTGGCAAGCAGGTTATTTCTCAACTTGGGATGGGGAATGTAGCACATTGGCACCACCTGAAGTGGTTGTTCTTGCTTCTGCTGCTGCCATTGAAGCCAGTTTTGTGTGATGACCGTTGGGATGGAGTGGTTGTCACACAATCAAACTTTCTAGCCCTTCAAGCATTCAAGCAAGAACTCATTGACCCAAAAGGCTTCTTGAGAAGCTGGAATGACAGTGGCTATGGAGCTTGCTCAGGTGGCTGGGCTGGTATCAAGTGTGCTCAGGGTGAAGTCATTGTGATCCAGCTTCCATGGAAGGGTTTGAAGGGCCACATCACTCAGAAAATTTCCCAACTTCAAGGCCTCAGAAAACTAAGTCTCCATGACAACCAAATTGGTGGTTCAATACCTTCATCATTGGGACTTCTTCCCAATCTAAGAGGTGTTCAACTCTTCAACAACAAGCTAACTGGTTCTGTTCCTCCTTCTTTAGGTTCTTGTCCTTTCCTTCAATCTTTAGACCTCAGCAACAATTTACTCACTGGTCAAATCCCTCCTAGCCTTGGGAATTTAACCAAGCTTTATTGGCTCAACTTGAGCTTCAATTCCTTCAATGGTTCAATACCATCTAGCTTAACTACTTTACCTTCTTTGACTTTCCTTTCTCTTCAACATAATAATCTCTCAGGCTCAATTCCTAACTCATGGGGTGGTAGCCATTCCTTCTTTAAGCTCCAGAATTTGATCTTAGATCACAACTTCTTGAGTGGAGCCATTCCTTCTTTTGGAAGCCTGGTTGAACTCAGAGAGGTTTCTCTTGGTAACAACAATTTTAGTGGAGAAATACCATTTGAAATTGGAAACCTTTCTAGGCTTAGAAAGTTAGATTTTTCTAACAATGCATTCAATGGAAGCTTGCCTGCTGCTATATCAAATTTATCCTCACTCACTCTGTTGAATGTAGAGAACAACCACTTTGCTAATCAAATCCCAGAAGCTTTAGGAGGATTACACAATCTTTCTGTTCTGGTTTTGAGTAGAAATCAATTTGTTGGTCACATTCCTCATAGTATTGGAAACATTTCATCGCTTACACGGCTTGATTTGTCACTGAATAAAATCAGTGGCGAAATTCCAGATTCCTTTGAGAATCTAGCTAGTCTTAATTCCTTCAATGTTTCTTACAATAATCTCTCTGGTCCTGTTCCCACATTACTTGCCAACAAATTTAACTCAAGCTCATTTTTGGGAAATATTCAATTATGTGGCTACAACCTTTCAAATCCATGTCCTTCACAAGCTCCTTCACAAGGAGTCATAGTCCCAACTCCTGAATCATCGAAACAACAGCATCATAAGAAACTAGGCATCAAAGACATAATCCTTATAGCTGCAGGGGTGCTCCTTGTAGTCCTGGTAACAATTTGCTGCATCCTGCTAGTCTGCCTTATCAGAAAAAGATCAACATCCGATGCTGAACATGGCCGGGCTACCACGAGAGCTGCCGCAACAAGGACAGGAAAGGGAATATCTCCTCCAGCTGCAGCCAGTGACATCGAAACTGGTGGCGAGAATGGAGGTAAACTAGTCCATTTTGATGGACCGCTGGCTTTTACGGCCGATGACCTCTTGTGTGCAACAGCAGAGATAATGGGAAAAAGTACCTATGGAACTGTCTACAAGGCTACATTGGAGGATGGAACCCAAGCTGCAGTTAAGAGATTGAGGGAAAAGATCACAAAAAGTCAAAGAGAATTTGAGTCTGAAGTTGCTGTGTTAGGGAGAATTAGGCATCCAAATCTGTTAGCACTAAGAGCTTATTACATGGGACCCAAAGGAGAAAAGCTTCTTGTGTTTGATTACATGCCTAATGGAAGTCTTGCTTCCTTCCTACATGCCCGAGGACCAGAAACACTGATTGATTGGCCAACAAGGATGAAAATAGCACAGGGCATGTCGCGTGGCTTGTTCCACCTTCACTCTCGTGAGAACATCATCCATGGGAACCTCACCTCCAGCAATGTATTGCTTGATGAGACCACAAATGCCAAGATAGCTGACTATGGTCTTTCCAGGTTGATGACAGCCGCGGCCAACTCCAATGTGATCGCGACGGCCGGGGCATTGGGGTACCGGGCGCCAGAGCTTTCAAAGCTGAAGAAAGCCAACACAAAAACTGATATATACAGCCTTGGTGTTATCTTGTTAGAACTCCTAACGGGTAAGCCACCGGGCGAGGCTATGAACGGCGTGGATTTGCCTCAGTGGGTTGCCTCCATTGTGAAGGAGGAGTGGACTAATGAGGTGTTTGATGTGGAGTTGATGAGGGATGCATCAACAAATGGGGATGAGTTGCTCAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTACTCCGTCGGCACGGCCAGAAGCACAGCAAGTGCTCCATCAGCTGGAAGAGATTAGGCAAGAGGTAGTATCAGCTAGTTCTGGTGATGATGGAGGCATCCCTTCAACTAGTGAATGA 2517 0.441 MHQYVYNWIGKQVISQLGMGNVAHWHHLKWLFLLLLLPLKPVLCDDRWDGVVVTQSNFLALQAFKQELIDPKGFLRSWNDSGYGACSGGWAGIKCAQGEVIVIQLPWKGLKGHITQKISQLQGLRKLSLHDNQIGGSIPSSLGLLPNLRGVQLFNNKLTGSVPPSLGSCPFLQSLDLSNNLLTGQIPPSLGNLTKLYWLNLSFNSFNGSIPSSLTTLPSLTFLSLQHNNLSGSIPNSWGGSHSFFKLQNLILDHNFLSGAIPSFGSLVELREVSLGNNNFSGEIPFEIGNLSRLRKLDFSNNAFNGSLPAAISNLSSLTLLNVENNHFANQIPEALGGLHNLSVLVLSRNQFVGHIPHSIGNISSLTRLDLSLNKISGEIPDSFENLASLNSFNVSYNNLSGPVPTLLANKFNSSSFLGNIQLCGYNLSNPCPSQAPSQGVIVPTPESSKQQHHKKLGIKDIILIAAGVLLVVLVTICCILLVCLIRKRSTSDAEHGRATTRAAATRTGKGISPPAAASDIETGGENGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGTQAAVKRLREKITKSQREFESEVAVLGRIRHPNLLALRAYYMGPKGEKLLVFDYMPNGSLASFLHARGPETLIDWPTRMKIAQGMSRGLFHLHSRENIIHGNLTSSNVLLDETTNAKIADYGLSRLMTAAANSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTNGDELLNTLKLALHCVDPTPSARPEAQQVLHQLEEIRQEVVSASSGDDGGIPSTSE 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120856g00026 838 Gene3D Transferase(Phosphotransferase) domain 1 625 830 - -
Stsc120856g00026 838 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Stsc120856g00026 838 Pfam Leucine rich repeat 341 400 IPR001611 GO:0005515
Stsc120856g00026 838 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 55 210 - -
Stsc120856g00026 838 FunFam Pollen receptor-like kinase 1 624 829 - -
Stsc120856g00026 838 Gene3D Ribonuclease Inhibitor 211 307 IPR032675 -
Stsc120856g00026 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 247 818 - -
Stsc120856g00026 838 Gene3D Ribonuclease Inhibitor 55 210 IPR032675 -
Stsc120856g00026 838 Gene3D Ribonuclease Inhibitor 308 434 IPR032675 -
Stsc120856g00026 838 SMART LRR_typ_2 217 240 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 121 144 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 339 362 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 363 386 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 387 410 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 315 338 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 145 169 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 170 193 IPR003591 -
Stsc120856g00026 838 SMART LRR_typ_2 291 314 IPR003591 -
Stsc120856g00026 838 Gene3D Phosphorylase Kinase; domain 1 553 624 - -
Stsc120856g00026 838 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 240 436 - -
Stsc120856g00026 838 CDD STKc_IRAK 553 818 - -
Stsc120856g00026 838 MobiDBLite consensus disorder prediction 495 514 - -
Stsc120856g00026 838 FunFam Leucine-rich repeat receptor-like protein kinase 532 623 - -
Stsc120856g00026 838 Pfam Protein kinase domain 550 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120856g00026 838 SUPERFAMILY L domain-like 94 433 - -
Stsc120856g00026 838 ProSiteProfiles Protein kinase domain profile. 547 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120856g00026 838 Pfam Leucine rich repeat N-terminal domain 59 95 IPR013210 -
Stsc120856g00026 838 SUPERFAMILY Protein kinase-like (PK-like) 551 820 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120856g00026 Stsc-Chr120856 161927 169249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120856g00026 48 819 Receptor kinase-like Gene Family AT3G51740 64.607 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120856g00026 Pkinase 4.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120856g00026 - - gmx:100811174 1268.06