Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120856g00003 ATGGCTTCTACTACTACTACTTATTTCTTGCTCTTGTTTGCTCTTGTTGCTGCAGCTTCAGTTTCTGAAGCAAATGCTGATCAGCTACGTACAGACTTCTACTCCTGCAGCTGCCGTAACCTTTTGGCCATTGTCAAGACTGGAATCACCAAAGCCCTTGAGAAAGAAGCTCGCATGGGAGCTTCCATACTCCGCCTTCATTTCCATGACTGCTTCGTAAATGGTTGTGATGCGTCGATACTACTGGACGATACGAGCAAGTTCATCGGAGAGCAGACAGCAGCGGCAAACAACAATTCAGCAAGAGGGTTCAATGTGATAGATGATATCAAAGCCATGGTGGAGAAAGAATGCCCTGGGGTGGTATCATGTGCTGATATTCTGGCATTGGCTGCTAGAGACTCTGTGGTTTATCTGGGAGGACCATCTTGGGAAGTAGGCTTAGGAAGAAGAGATTCTACTACAGCAAGTAGACTTGATGCTAATAACTCCATTCCTGCACCCTCATTCAGTTTAAGTACTCTCAAAAAGAATTTTGCTAATCAGGGCCTCTCAGAGAAAGACTTGGTAGCCCTCTCAGGGGCACATACCATTGGCCTAGCTCAATGCAGACTTTTCAGACCACATATCTACAATGACACCAACATTGATGCCTCCTTTGCCAAAATCTTGCAGAGCAAGTGCCCTAGAACTGGAAACGACAGATTGCTCGAACCCCTTGACCGTCAAACTCCCTTCCATTTCGATAACCTGTACTATAAGAATTTGGTTCAGAAGAAGGTTCTTCTTCATTCCGACCAGGAGCTGTATAATGGCGGTTCTACCGACCATCTGGTGGAGAAATATGCTACTGAAAGAGTCGCATTCTTTAATGACTTTGCTGAGGGCATGGTGAAAATGAGCAGCATCAAGCCTCTCACTGGAAAAAAGGGGGAGATCAGACTTAATTGTGCTAAAGTCAACTAA 966 0.4524 MASTTTTYFLLLFALVAAASVSEANADQLRTDFYSCSCRNLLAIVKTGITKALEKEARMGASILRLHFHDCFVNGCDASILLDDTSKFIGEQTAAANNNSARGFNVIDDIKAMVEKECPGVVSCADILALAARDSVVYLGGPSWEVGLGRRDSTTASRLDANNSIPAPSFSLSTLKKNFANQGLSEKDLVALSGAHTIGLAQCRLFRPHIYNDTNIDASFAKILQSKCPRTGNDRLLEPLDRQTPFHFDNLYYKNLVQKKVLLHSDQELYNGGSTDHLVEKYATERVAFFNDFAEGMVKMSSIKPLTGKKGEIRLNCAKVN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120856g00003 321 SUPERFAMILY Heme-dependent peroxidases 28 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 Gene3D - 32 321 - -
Stsc120856g00003 321 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 PANTHER PEROXIDASE 72-RELATED 26 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 CDD secretory_peroxidase 28 320 IPR033905 GO:0004601|GO:0042744
Stsc120856g00003 321 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Stsc120856g00003 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Stsc120856g00003 321 FunFam Peroxidase 32 178 - -
Stsc120856g00003 321 ProSiteProfiles Plant heme peroxidase family profile. 28 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 Gene3D Peroxidase, domain 2 166 300 - -
Stsc120856g00003 321 Pfam Peroxidase 47 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc120856g00003 321 FunFam Peroxidase 166 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120856g00003 Stsc-Chr120856 39340 40746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120856g00003 28 321 Peroxidase AT5G05340 61.824 1.15e-131 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120856g00003 K00430 - gmx:100793973 478.018