Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120856g00001 ATGTCCAGAGAAAGGGAGAGATCAGTTGATGAGATAGGGAAGAAGATCAAGAGGGAGGGAGATGGTCAAAAGGGAAGGAGACAACAACACATGTTAGGAAGTCAACAACAACATCCTCATAATCAAGGAACCCTAAATACAATTACCCCTTGTGCTGCATGCAAGCTCTTGAGAAGAAGATGTGCTCAAGAATGTCCCTTTTCTCCTTATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTTCACAAAGTCTTTGGTGCCAGCAATGTCTCAAAGTTGCTAATGGAAGTGCCTGAGAATCAAAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCAAATGTGAGGCTAAAAGATCCAGTTTATGGATGCATGGGTGCAATATCTTCTTTGCAACAACAAGTCCAATACCTAGTTGCTGAACTCAATGCCGTGAGGGATGAAATACTCAAATACAAACTTAGGGAAGTTAATGCCGCCATGATTCCCTCATCTTCTCATCATGTAATGCTTCCTTCTTCTTCATCATCAGATGTTGTTTCTATCGCCGTTACGCCACCGCCACCGCCGCCGCCTAATTCTCTACCCACAAGTACCTCTTCAACTACCTCTTCTTCCATGATTTATCCCCAACAAACTGATCCTTCAAATTATGGGACAATTTCTAGTGATAATAATGTTCCCTATTTTGGTTGA 699 0.4249 MSRERERSVDEIGKKIKREGDGQKGRRQQHMLGSQQQHPHNQGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLKDPVYGCMGAISSLQQQVQYLVAELNAVRDEILKYKLREVNAAMIPSSSHHVMLPSSSSSDVVSIAVTPPPPPPPNSLPTSTSSTTSSSMIYPQQTDPSNYGTISSDNNVPYFG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120856g00001 232 MobiDBLite consensus disorder prediction 180 232 - -
Stsc120856g00001 232 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120856g00001 232 Coils Coil 129 149 - -
Stsc120856g00001 232 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Stsc120856g00001 232 Pfam Lateral organ boundaries (LOB) domain 50 146 IPR004883 -
Stsc120856g00001 232 MobiDBLite consensus disorder prediction 28 44 - -
Stsc120856g00001 232 MobiDBLite consensus disorder prediction 1 44 - -
Stsc120856g00001 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 46 190 - -
Stsc120856g00001 232 MobiDBLite consensus disorder prediction 198 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120856g00001 Stsc-Chr120856 12773 14558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120856g00001 43 232 AS2 family AT2G40470 68.063 2.55e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc120856g00001 LOB 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120856g00001 - - ccaj:109797870 271.166